RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1112809", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA1112809 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9951577 9951577 PRJNA1112809_P_NODE_191268_length_242_cov_0.893491_g187993_i0 PRJNA1112809 191268 242 0.893491 2.16224822 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 149 4.68e-43   NR KAH9255726.1 1357716 g187993 i0 87.3 0.979338842975207 79 10 97.9 0 241 5 66 144 KAH9255726.1 translation elongation factor IF5A [Batrachochytrium salamandrivorans] diamond 237 149 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
18874983 18874983 PRJNA1112809_P_NODE_164035_length_251_cov_0.932584_g160760_i0 PRJNA1112809 164035 251 0.932584 2.34078584 Opisthokonta 33154 Fungi Fungi 464 2.47e-126   NTclustered gi|19386988|gb|AF450112.1| 109953 g160760 i0 100 99.4780876494024 251 0 100 0 1 251 544 794 Monoblepharis insignis translation elongation factor 1-alpha gene, partial cds blastn 24969 464 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Monoblepharidaceae Monoblepharis Monoblepharis insignis
26783253 26783253 PRJNA1112809_P_NODE_191801_length_241_cov_1.833333_g188526_i0 PRJNA1112809 191801 241 1.833333 4.41833253 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 68.6 2.87e-11   NR KAH9256933.1 1357716 g188526 i0 52.2 0.858921161825726 69 32 85.9 1 1 207 325 392 KAH9256933.1 hypothetical protein BASA81_004754 [Batrachochytrium salamandrivorans] diamond 207 68.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
30596000 30596000 PRJNA1112809_P_NODE_104073_length_323_cov_1.776000_g100798_i0 PRJNA1112809 104073 323 1.776 5.73648 root 1 Root_unresolved Root_unresolved 45.4 0.00764   NR KAJ3392144.1 109889 g100798 i0 45.2 5.56346749226006 42 20 39 1 192 317 171 209 KAJ3392144.1 hypothetical protein HDU92_008621 [Lobulomyces angularis] diamond 1797 45.8 0.991266375545852 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales Lobulomycetaceae Lobulomyces Lobulomyces angularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;