RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1112809", tax_clade = "Opisthokonta" and tax_phylum = "Blastocladiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1112809 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7872432 7872432 PRJNA1112809_P_NODE_155687_length_258_cov_1.664865_g152412_i0 PRJNA1112809 155687 258 1.664865 4.2953517 Paraphysoderma sedebokerense 1500003 Fungi Fungi 160 1.9e-46   NR KAI9140511.1 1500003 g152412 i0 84.7 8.88372093023256 85 13 98.8 0 3 257 183 267 KAI9140511.1 WD40-repeat-containing domain protein [Paraphysoderma sedebokerense] diamond 2292 160 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
21896706 21896706 PRJNA1112809_P_NODE_170178_length_249_cov_0.875000_g166903_i0 PRJNA1112809 170178 249 0.875 2.17875 Eukaryota 2759 Fungi Fungi 144 6.32e-43   NR KNE59758.1 578462 g166903 i0 81.5 33.0843373493976 81 15 97.6 0 5 247 3 83 KNE59758.1 60S ribosomal protein L37a [Allomyces macrogynus ATCC 38327] diamond 8238 144 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus
32335568 32335568 PRJNA1112809_P_NODE_99159_length_333_cov_1.184615_g95884_i0 PRJNA1112809 99159 333 1.184615 3.94476795 Opisthokonta 33154 Fungi Fungi 132 6.989999999999999e-37   NR KAJ3348302.1 64505 g95884 i0 63.8 49.1531531531532 105 27 94.6 2 16 330 64 157 KAJ3348302.1 ribosomal protein S15 [Allomyces javanicus] diamond 16368 133 0.992481203007519 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces javanicus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;