RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1112809", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA1112809 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1494912 1494912 PRJNA1112809_P_NODE_193382_length_241_cov_0.916667_g190107_i0 PRJNA1112809 193382 241 0.916667 2.20916747 Chlorobium phaeobacteroides 1096 Bacteria Bacteria 54.7 0.006   NTclustered gi|119353206|gb|CP000492.1| 290317 g190107 i0 100 0.120331950207469 29 0 12 0 181 209 2386847 2386875 Chlorobium phaeobacteroides DSM 266, complete genome blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides
28962907 28962907 PRJNA1112809_P_NODE_184368_length_244_cov_0.900585_g181093_i0 PRJNA1112809 184368 244 0.900585 2.1974274 Chlorobi bacterium OLB7 1619898 Bacteria Bacteria 83.6 9.16e-17   NR KXK54875.1 1619898 g181093 i0 74.5 0.676229508196721 55 14 67.6 0 4 168 304 358 KXK54875.1 MAG: hypothetical protein UZ07_CHB004002402 [Chlorobi bacterium OLB7] diamond 165 83.6 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium OLB7
29435930 29435930 PRJNA1112809_P_NODE_109990_length_312_cov_2.564854_g106715_i0 PRJNA1112809 109990 312 2.564854 8.00234448 Chlorobium phaeovibrioides 1094 Bacteria Bacteria 81.6 6.91e-16   NR WP_149998160.1 1094 g106715 i0 38.4 0.951923076923077 99 61 95.2 0 5 301 76 174 WP_149998160.1 hypothetical protein [Chlorobium phaeovibrioides] diamond 297 81.6 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeovibrioides
31079038 31079038 PRJNA1112809_P_NODE_106315_length_319_cov_1.292683_g103040_i0 PRJNA1112809 106315 319 1.292683 4.12365877 Chlorobaculum sp. 2053530 Bacteria Bacteria 102 1e-22   NR NTV67571.1 2053530 g103040 i0 51.5 1.94670846394984 103 50 96.9 0 6 314 682 784 NTV67571.1 ATP-binding protein [Chlorobaculum sp.] diamond 621 102 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;