RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1112809", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1112809 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27880317 27880317 PRJNA1112809_P_NODE_53745_length_512_cov_1.799544_g50477_i0 PRJNA1112809 53745 512 1.799544 9.21366528 FCB group 1783270 Bacteria Bacteria 129 1.01e-33   NR MCC6488135.1 2030809 g50477 i0 40.6 4.916015625 170 101 99.6 0 512 3 15 184 MCC6488135.1 4'-phosphopantetheinyl transferase superfamily protein [Candidatus Hydrogenedentota bacterium] diamond 2517 130 0.992307692307692 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
30541772 30541772 PRJNA1112809_P_NODE_136453_length_277_cov_1.931373_g133178_i0 PRJNA1112809 136453 277 1.931373 5.34990321 Candidatus Hydrogenedens sp. 2654184 Bacteria Bacteria 69.7 1.82e-11   NR HOV33736.1 2654184 g133178 i0 41 0.844765342960289 78 45 84.5 1 238 5 7 83 HOV33736.1 DNA primase [Candidatus Hydrogenedens sp.] diamond 234 69.7 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota Candidatus Hydrogenedentia Candidatus Hydrogenedentales Candidatus Hydrogenedentaceae Candidatus Hydrogenedens Candidatus Hydrogenedens sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;