RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1112809", tax_clade = "FCB group" and tax_phylum = "Balneolota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Balneolota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1112809 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27059072 27059072 PRJNA1112809_P_NODE_164722_length_251_cov_0.865169_g161447_i0 PRJNA1112809 164722 251 0.865169 2.17157419 Fodinibius 1397106 Bacteria Bacteria 97.4 7.24e-22   NR NIT56137.1 1872440 g161447 i0 87.3 1.97211155378486 55 7 65.7 0 3 167 306 360 NIT56137.1 HAMP domain-containing protein [Fodinibius sp.] diamond 495 98.2 0.991853360488798 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Fodinibius Fodinibius sp.
27257557 27257557 PRJNA1112809_P_NODE_156483_length_257_cov_2.353261_g153208_i0 PRJNA1112809 156483 257 2.353261 6.04788077 Aliifodinibius salipaludis 2032627 Bacteria Bacteria 170 4.86e-50   NR WP_176466292.1 2032627 g153208 i0 100 0.992217898832685 85 0 99.2 0 257 3 9 93 WP_176466292.1 universal stress protein [Aliifodinibius salipaludis] diamond 255 170 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Fodinibius Fodinibius salipaludis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;