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contig_metadata

11 rows where bioproject = "PRJNA1112809", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 11 ✖

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJNA1112809 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4048632 4048632 PRJNA1112809_P_NODE_92204_length_348_cov_2.745455_g88929_i0 PRJNA1112809 92204 348 2.745455 9.5541834 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 254 8.42e-63   NTclustered gi|909719647|gb|KT185627.1| 5778 g88929 i0 80.851 2.20977011494253 329 57 94 5 21 347 25288 25612 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 769 254 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11698144 11698144 PRJNA1112809_P_NODE_145370_length_268_cov_1.528205_g142095_i0 PRJNA1112809 145370 268 1.528205 4.0955894 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 226 1.37e-54   NTclustered gi|909719647|gb|KT185627.1| 5778 g142095 i0 81.955 0.992537313432836 266 48 99 0 3 268 7433 7698 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 266 226 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11698173 11698173 PRJNA1112809_P_NODE_146670_length_267_cov_1.164948_g143395_i0 PRJNA1112809 146670 267 1.164948 3.11041116 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 144 1.07e-38   NR YP_003540849.1 5778 g143395 i0 97.3 1.68539325842697 75 2 84.3 0 42 266 314 388 YP_003540849.1 cytochrome c oxidase subunit 2 [Vermamoeba vermiformis] diamond 450 144 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13776384 13776384 PRJNA1112809_P_NODE_111411_length_310_cov_1.869198_g108136_i0 PRJNA1112809 111411 310 1.869198 5.7945138 Vermamoeba 1260114 Tubulinea other_Eukaryota 568 2.3299999999999995e-157   NTclustered gi|909719645|gb|KT185625.1| 5778 g108136 i0 99.677 98.1612903225806 310 1 100 0 1 310 5615 5306 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 30430 568 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21425703 21425703 PRJNA1112809_P_NODE_93977_length_344_cov_2.191882_g90702_i0 PRJNA1112809 93977 344 2.191882 7.54007408 Vermamoeba 1260114 Tubulinea other_Eukaryota 614 3.309999999999999e-171   NTclustered gi|909719645|gb|KT185625.1| 5778 g90702 i0 98.837 40.9302325581395 344 4 100 0 1 344 5343 5000 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 14080 614 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29309958 29309958 PRJNA1112809_P_NODE_189389_length_242_cov_1.319527_g186114_i0 PRJNA1112809 189389 242 1.319527 3.19325534 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 97.1 2.2400000000000003e-21   NR YP_003540849.1 5778 g186114 i0 66.2 0.954545454545455 77 26 95.5 0 3 233 108 184 YP_003540849.1 cytochrome c oxidase subunit 2 [Vermamoeba vermiformis] diamond 231 97.1 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29341688 29341688 PRJNA1112809_P_NODE_198349_length_230_cov_2.649682_g195074_i0 PRJNA1112809 198349 230 2.649682 6.0942686 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 129 4.33e-35   NR AKT93937.1 5778 g195074 i0 77.6 0.991304347826087 76 17 99.1 0 2 229 40 115 AKT93937.1 ribosomal protein L2 [Vermamoeba vermiformis] diamond 228 129 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29531046 29531046 PRJNA1112809_P_NODE_139030_length_275_cov_0.792079_g135755_i0 PRJNA1112809 139030 275 0.792079 2.17821725 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 135 4.56e-35   NR YP_003540846.1 5778 g135755 i0 88.3 0.84 77 9 84 0 3 233 454 530 YP_003540846.1 cytochrome c oxidase subunit 1 [Vermamoeba vermiformis] diamond 231 135 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29720186 29720186 PRJNA1112809_P_NODE_152150_length_261_cov_2.351064_g148875_i0 PRJNA1112809 152150 261 2.351064 6.13627704 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 150 3.2299999999999998e-43   NR YP_003540842.1 5778 g148875 i0 98.6 0.850574712643678 74 1 85.1 0 259 38 166 239 YP_003540842.1 cytochrome c oxidase subunit 3 [Vermamoeba vermiformis] diamond 222 150 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30257746 30257746 PRJNA1112809_P_NODE_134172_length_280_cov_1.193237_g130897_i0 PRJNA1112809 134172 280 1.193237 3.3410636 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 111 5.18e-29   NR AKT93932.1 5778 g130897 i0 72.7 1.66071428571429 77 20 82.5 1 279 49 77 152 AKT93932.1 ribosomal protein L11 [Vermamoeba vermiformis] diamond 465 111 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30984321 30984321 PRJNA1112809_P_NODE_161814_length_252_cov_2.798883_g158539_i0 PRJNA1112809 161814 252 2.798883 7.05318516 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 89.7 1.15e-18   NR AKT93962.1 5778 g158539 i0 56.5 1.01190476190476 85 35 98.8 1 3 251 22 106 AKT93962.1 hypothetical protein AB846_53 [Vermamoeba vermiformis] diamond 255 89.7 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;