RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1112809", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA1112809 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6599643 6599643 PRJNA1112809_P_NODE_82146_length_376_cov_1.669967_g78871_i0 PRJNA1112809 82146 376 1.669967 6.27907592 Vexillifera multispinosa 1105342 Discosea other_Eukaryota 422 2.37e-113   NTclustered gi|354720322|gb|HQ687481.1| 1105342 g78871 i0 87.903 55.1595744680851 372 27 99 12 6 376 1243 889 Vexillifera multispinosa strain P124 small subunit ribosomal RNA gene, partial sequence blastn 20740 422 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera multispinosa
21897687 21897687 PRJNA1112809_P_NODE_45618_length_581_cov_90.838583_g42377_i0 PRJNA1112809 45618 581 90.838583 527.77216723 Vexillifera multispinosa 1105342 Discosea other_Eukaryota 584 4.579999999999998e-162   NTclustered gi|354720322|gb|HQ687481.1| 1105342 g42377 i0 85.025 64.3373493975904 601 61 100 23 1 581 15 606 Vexillifera multispinosa strain P124 small subunit ribosomal RNA gene, partial sequence blastn 37380 584 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera multispinosa
27627908 27627908 PRJNA1112809_P_NODE_73384_length_406_cov_2.447447_g70109_i0 PRJNA1112809 73384 406 2.447447 9.93663482 root 1 Root_unresolved Root_unresolved 75.5 1.08e-13   NR XP_004338118.1 1257118 g70109 i0 45.9 1.85467980295567 61 33 45.1 0 4 186 40 100 XP_004338118.1 membraneassociated ring finger (C3HC4) 2, putative, partial [Acanthamoeba castellanii str. Neff] diamond 753 75.9 0.994729907773386 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28836363 28836363 PRJNA1112809_P_NODE_98128_length_335_cov_1.511450_g94853_i0 PRJNA1112809 98128 335 1.51145 5.0633575 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 67.4 1.51e-11   NR XP_004337874.1 1257118 g94853 i0 42.9 0.814925373134328 91 49 80.6 2 333 64 7 95 XP_004337874.1 uncharacterized protein ACA1_187480 [Acanthamoeba castellanii str. Neff] diamond 273 67.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29183897 29183897 PRJNA1112809_P_NODE_194069_length_241_cov_0.916667_g190794_i0 PRJNA1112809 194069 241 0.916667 2.20916747 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 83.2 6.17e-17   NR XP_004338074.1 1257118 g190794 i0 68.6 2.39004149377593 70 22 87.1 0 239 30 165 234 XP_004338074.1 TolAlike protein [Acanthamoeba castellanii str. Neff] diamond 576 83.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30036337 30036337 PRJNA1112809_P_NODE_159191_length_255_cov_1.472527_g155916_i0 PRJNA1112809 159191 255 1.472527 3.75494385 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 130 8.01e-33   NR XP_004356732.1 1257118 g155916 i0 67.9 0.988235294117647 84 27 98.8 0 254 3 323 406 XP_004356732.1 vacuolar proton ATPase, putative [Acanthamoeba castellanii str. Neff] diamond 252 130 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;