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contig_metadata

31 rows where bioproject = "PRJNA1111448" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 31 ✖

bioproject 1

  • PRJNA1111448 · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
217351 217351 PRJNA1111448_S_NODE_115701_length_255_cov_2.027473_g114878_i0 PRJNA1111448 115701 255 2.027473 5.17005615 Wufeng shrew picornavirus 2 3084773 Viruses Viruses 52.8 0.023   NTclustered gi|2633074035|gb|OQ716065.1| 3084773 g114878 i0 100 0.109803921568627 28 0 11 0 103 130 9748 9721 MAG: Wufeng shrew picornavirus 2 isolate WF_Ch.smithii_picorna_3 polyprotein gene, complete cds blastn 28 52.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Wufeng shrew picornavirus 2
2298443 2298443 PRJNA1111448_S_NODE_92862_length_280_cov_1.115942_g92039_i0 PRJNA1111448 92862 280 1.115942 3.1246376 root 1 Root_unresolved Root_unresolved 507 4.58e-139   NTclustered gi|1173658|gb|U36602.1|MLU36602 11786 g92039 i0 99.286 9 280 2 100 0 1 280 955 676 Murine leukemia virus gPr80 envelope polyprotein precursor (env) mRNA, complete cds blastn 2520 507 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
4044368 4044368 PRJNA1111448_S_NODE_128324_length_247_cov_0.885057_g127501_i0 PRJNA1111448 128324 247 0.885057 2.18609079 Betacoronavirus pandemicum 3418604 Viruses Viruses 73.1 1.71e-8   NTclustered gi|2557639027|emb|OY695365.1| 2697049 g127501 i0 97.674 16.2388663967611 43 0 17 1 2 44 19286 19245 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4011 73.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
5320401 5320401 PRJNA1111448_S_NODE_133085_length_244_cov_1.222222_g132262_i0 PRJNA1111448 133085 244 1.222222 2.98222168 Betacoronavirus pandemicum 3418604 Viruses Viruses 82.4 2.81e-11   NTclustered gi|2557415206|emb|OY652159.1| 2697049 g132262 i0 90.625 21.9180327868852 64 3 25 3 177 238 7114 7176 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 5348 82.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
6596310 6596310 PRJNA1111448_S_NODE_64886_length_319_cov_1.252033_g64063_i0 PRJNA1111448 64886 319 1.252033 3.99398527 Parvoviridae sp. 1940570 Viruses Viruses 110 3.09e-26   NR XNT21000.1 1940570 g64063 i0 66.2 0.695924764890282 74 24 69.6 1 1 222 7 79 XNT21000.1 MAG: replication protein [Parvoviridae sp.] diamond 222 110 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp.
6596608 6596608 PRJNA1111448_S_NODE_94326_length_278_cov_1.502439_g93503_i0 PRJNA1111448 94326 278 1.502439 4.17678042 Betaretrovirus murmamtum 3427295 Viruses Viruses 508 1.26e-139   NTclustered gi|6911279|gb|AF228551.1|AF228551 46608 g93503 i0 99.64 37.6115107913669 278 1 100 0 1 278 1624 1347 Exogenous mouse mammary tumor virus HeJ complete proviral genome blastn 10456 508 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
6596633 6596633 PRJNA1111448_S_NODE_96406_length_276_cov_0.758621_g95583_i0 PRJNA1111448 96406 276 0.758621 2.09379396 Salmonella phage Salmp-p7 3344723 Viruses Viruses 62.1 4.22e-5   NTclustered gi|2806890669|gb|PQ189589.1| 3344723 g95583 i0 100 0.119565217391304 33 0 12 0 9 41 60051 60019 Salmonella phage Salmp-p7, complete genome blastn 33 62.1 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Casjensviridae Chivirus Salmonella phage Salmp-p7
7871017 7871017 PRJNA1111448_S_NODE_63827_length_321_cov_0.931452_g63004_i0 PRJNA1111448 63827 321 0.931452 2.98996092 Caudoviricetes sp. 2832643 Viruses Viruses 69.4 2.99e-7   NTclustered gi|2914818327|gb|OR222051.1| 2832643 g63004 i0 100 12.6573208722741 37 0 12 0 14 50 15 51 MAG: Caudoviricetes sp. isolate MSP0064 genomic sequence blastn 4063 69.4 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
8675693 8675693 PRJNA1111448_S_NODE_103587_length_268_cov_0.938462_g102764_i0 PRJNA1111448 103587 268 0.938462 2.51507816 Alphapapillomavirus 333750 Viruses Viruses 496 9.429999999999999e-136   NTclustered gi|1162227033|gb|KY501965.1| 10566 g102764 i0 100 100 268 0 100 0 1 268 623 890 Human papillomavirus isolate HPV18 P1 replication protein E1 (E1) gene, partial cds blastn 26800 496 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
8675843 8675843 PRJNA1111448_S_NODE_137347_length_242_cov_0.911243_g136524_i0 PRJNA1111448 137347 242 0.911243 2.20520806 Orthorubulavirus 2560195 Viruses Viruses 335 1.9299999999999993e-87   NTclustered gi|1806608684|gb|MN604146.1| 2560580 g136524 i0 99.457 64.0247933884298 184 1 76 0 1 184 296 113 Mammalian orthorubulavirus 5 isolate XJ033, complete genome blastn 15494 335 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthorubulavirus Orthorubulavirus mammalis
9145719 9145719 PRJNA1111448_S_NODE_4828_length_747_cov_2.074184_g4189_i0 PRJNA1111448 4828 747 2.074184 15.49415448 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 56.5 0.006   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g4189 i0 100 0.0789825970548862 30 0 4 0 718 747 85 56 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 59 56.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1
10420891 10420891 PRJNA1111448_S_NODE_114809_length_256_cov_1.683060_g113986_i0 PRJNA1111448 114809 256 1.68306 4.3086336 Chronazanb virus 3129852 Viruses Viruses 145 3.73e-30   NTclustered gi|2717318485|gb|PP172249.1| 3129852 g113986 i0 94.624 16.74609375 93 5 36 0 20 112 4485 4393 MAG: Chronazanb virus isolate CN1B_k141_35798 genomic sequence blastn 4287 145 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Chronazanb virus
10421209 10421209 PRJNA1111448_S_NODE_17409_length_487_cov_9.410628_g16592_i0 PRJNA1111448 17409 487 9.410628 45.82975836 Gammaretrovirus murleu 3428959 Viruses Viruses 821 0   NTclustered gi|332038|gb|K01204.1|MLVGPB 11786 g16592 i0 97.308 99.1457905544148 483 13 99 0 1 483 254 736 Murine leukemia virus B-tropic strain WN1802B gag-pol region blastn 48284 821 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
10421606 10421606 PRJNA1111448_S_NODE_56169_length_335_cov_1.175573_g55346_i0 PRJNA1111448 56169 335 1.175573 3.93816955 Caudoviricetes sp. 2832643 Viruses Viruses 52.8 0.032   NTclustered gi|2059564958|tpg|BK036394.1| 2832643 g55346 i0 100 0.0835820895522388 28 0 8 0 70 97 40191 40164 MAG TPA_asm: Caudoviricetes sp. isolate ct7fR1, partial genome blastn 28 52.8 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
10421739 10421739 PRJNA1111448_S_NODE_69809_length_311_cov_0.970588_g68986_i0 PRJNA1111448 69809 311 0.970588 3.01852868 Caudoviricetes sp. 2832643 Viruses Viruses 58.4 6.25e-4   NTclustered gi|2054675504|tpg|BK052493.1| 2832643 g68986 i0 100 3.09967845659164 31 0 10 0 1 31 12969 12939 MAG TPA_asm: Caudoviricetes sp. isolate ctLb07, partial genome blastn 964 58.4 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
11696232 11696232 PRJNA1111448_S_NODE_124810_length_249_cov_0.801136_g123987_i0 PRJNA1111448 124810 249 0.801136 1.99482864 Betacoronavirus pandemicum 3418604 Viruses Viruses 97.1 1.03e-15   NTclustered gi|2165836885|emb|OV197189.1| 2697049 g123987 i0 93.846 23.6987951807229 65 2 26 2 3 67 29973 29911 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 5901 97.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
12971896 12971896 PRJNA1111448_S_NODE_49291_length_349_cov_4.376812_g48468_i0 PRJNA1111448 49291 349 4.376812 15.27507388 Capillovirus mali 28347 Viruses Viruses 640 5.529999999999999e-179   NTclustered gi|1486551909|gb|MH144342.1| 33759 g48468 i0 99.713 99.7077363896848 349 1 100 0 1 349 6148 6496 Citrus tatter leaf virus isolate ASGV-1-HJY, complete genome blastn 34798 640 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
13775738 13775738 PRJNA1111448_S_NODE_114931_length_256_cov_1.475410_g114108_i0 PRJNA1111448 114931 256 1.47541 3.7770496 Gemykibivirus 1941236 Viruses Viruses 473 4.189999999999999e-129   NTclustered gi|2164969991|gb|MN765186.1| 2004957 g114108 i0 100 59.0625 256 0 100 0 1 256 1776 2031 Human associated gemykibivirus 2 isolate SAfia-092D, partial genome blastn 15120 473 1 Viruses   Shotokuvirae Cressdnaviricota Repensiviricetes Geplafuvirales Genomoviridae Gemykibivirus Gemykibivirus humas2
13775897 13775897 PRJNA1111448_S_NODE_21611_length_455_cov_3.594241_g20789_i0 PRJNA1111448 21611 455 3.594241 16.35379655 root 1 Root_unresolved Root_unresolved 804 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g20789 i0 99.105 98.1538461538462 447 4 98 0 9 455 2006 1560 Moloney murine leukemia virus, complete genome blastn 44660 804 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
15520505 15520505 PRJNA1111448_S_NODE_27773_length_419_cov_6.546243_g26950_i0 PRJNA1111448 27773 419 6.546243 27.42875817 Betaretrovirus murmamtum 3427295 Viruses Viruses 730 0   NTclustered gi|6911285|gb|AF228552.1|AF228552 46608 g26950 i0 98.095 27.2577565632458 420 7 100 1 1 419 2045 1626 Exogenous mouse mammary tumor virus C3H complete proviral genome blastn 11421 730 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
16795613 16795613 PRJNA1111448_S_NODE_96314_length_276_cov_1.098522_g95491_i0 PRJNA1111448 96314 276 1.098522 3.03192072 Betacoronavirus pandemicum 3418604 Viruses Viruses 93.5 1.5e-14   NTclustered gi|2165836885|emb|OV197189.1| 2697049 g95491 i0 95 19.6521739130435 60 1 22 2 1 60 29968 29911 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 5424 93.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
20619237 20619237 PRJNA1111448_S_NODE_59337_length_329_cov_1.152344_g58514_i0 PRJNA1111448 59337 329 1.152344 3.79121176 Betacoronavirus pandemicum 3418604 Viruses Viruses 73.1 2.38e-8   NTclustered gi|2557399578|emb|OY642376.1| 2697049 g58514 i0 92.308 13.3434650455927 52 2 16 2 1 52 19297 19248 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4390 73.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
24443668 24443668 PRJNA1111448_S_NODE_137700_length_242_cov_0.893491_g136877_i0 PRJNA1111448 137700 242 0.893491 2.16224822 Caudoviricetes sp. 2832643 Viruses Viruses 65.8 2.8e-6   NTclustered gi|2914835947|gb|OR222690.1| 2832643 g136877 i0 100 16.4380165289256 35 0 14 0 1 35 5 39 MAG: Caudoviricetes sp. isolate MSP0243 genomic sequence blastn 3978 65.8 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
24443944 24443944 PRJNA1111448_S_NODE_36340_length_386_cov_0.984026_g35517_i0 PRJNA1111448 36340 386 0.984026 3.79834036 Enterococcus phage SSMH01 3075855 Viruses Viruses 71.3 1.02e-7   NTclustered gi|2583824285|gb|OR360270.1| 3075855 g35517 i0 95.455 10.4430051813472 44 2 11 0 3 46 41636 41593 Enterococcus phage SSMH01, complete genome blastn 4031 71.3 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes     Efquatrovirus Enterococcus phage SSMH01
27352543 27352543 PRJNA1111448_S_NODE_141863_length_232_cov_2.528302_g141040_i0 PRJNA1111448 141863 232 2.528302 5.86566064 Human immunodeficiency virus 1 11676 Viruses Viruses 41.6 0.0384   NR AER38158.1 11676 g141040 i0 31.8 0.568965517241379 44 30 56.9 0 80 211 80 123 AER38158.1 envelope glycoprotein, partial [Human immunodeficiency virus 1] diamond 132 41.6 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
30090461 30090461 PRJNA1111448_S_NODE_87472_length_286_cov_1.732394_g86649_i0 PRJNA1111448 87472 286 1.732394 4.95464684 Gammaretrovirus 153135 Viruses Viruses 186 3.7e-52   NR NP_057933.2 11801 g86649 i0 97.9 13.951048951049 95 2 99.7 0 285 1 1168 1262 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 3990 186 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30384190 30384190 PRJNA1111448_S_NODE_23353_length_444_cov_1.940701_g22531_i0 PRJNA1111448 23353 444 1.940701 8.61671244 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 59.7 4.04e-7   NR UNY42093.1 3003959 g22531 i0 66.7 0.263513513513513 39 13 26.4 0 327 443 25 63 UNY42093.1 MAG: polyprotein 1 [Picornavirales sp.] diamond 117 59.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3
30668123 30668123 PRJNA1111448_S_NODE_56753_length_334_cov_0.942529_g55930_i0 PRJNA1111448 56753 334 0.942529 3.14804686 Marsupial endogenous gammaretrovirus 1 3386029 Viruses Viruses 89.7 3.29e-18   NR DBA62707.1 3386029 g55930 i0 46.2 0.817365269461078 91 43 81.7 1 275 3 1 85 DBA62707.1 TPA_asm: Gag [Marsupial endogenous gammaretrovirus 1] diamond 273 89.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Marsupial endogenous gammaretrovirus 1
30668126 30668126 PRJNA1111448_S_NODE_96213_length_276_cov_1.137931_g95390_i0 PRJNA1111448 96213 276 1.137931 3.14068956 Vallisneria spiralis virus 1 3351449 Viruses Viruses 143 6.439999999999998e-41   NR DBA60344.1 3351449 g95390 i0 88.6 0.858695652173913 79 9 85.9 0 276 40 131 209 DBA60344.1 TPA_asm: coat protein [Vallisneria spiralis virus 1] diamond 237 143 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Tepovirus Vallisneria spiralis virus 1
30921095 30921095 PRJNA1111448_S_NODE_12034_length_552_cov_3.803758_g11239_i0 PRJNA1111448 12034 552 3.803758 20.99674416 Marsupial endogenous gammaretrovirus 1 3386029 Viruses Viruses 91.7 8.03e-18   NR DBA62707.1 3386029 g11239 i0 45.7 0.5 92 44 50 1 334 59 1 86 DBA62707.1 TPA_asm: Gag [Marsupial endogenous gammaretrovirus 1] diamond 276 91.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Marsupial endogenous gammaretrovirus 1
32691427 32691427 PRJNA1111448_S_NODE_73040_length_306_cov_0.991416_g72217_i0 PRJNA1111448 73040 306 0.991416 3.03373296 Picornaviridae sp. 1530251 Viruses Viruses 180 2.05e-51   NR URG14993.1 1530251 g72217 i0 78.4 1 102 22 100 0 1 306 34 135 URG14993.1 MAG: RNA dependent RNA polymerase, partial [Picornaviridae sp.] diamond 306 180 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Picornaviridae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;