RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1111448" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1111448 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27888979 27888979 PRJNA1111448_S_NODE_63665_length_321_cov_1.443548_g62842_i0 PRJNA1111448 63665 321 1.443548 4.63378908 Syntrophobacterales bacterium RBG_19FT_COMBO_59_1 2282155 Bacteria Bacteria 125 6.789999999999999e-31   NR OHE22215.1 1802289 g62842 i0 53.8 4.95327102803738 104 47 96.3 1 3 311 465 568 OHE22215.1 MAG: phosphoenolpyruvate carboxykinase [Syntrophobacterales bacterium RBG_19FT_COMBO_59_10] diamond 1590 125 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales     Syntrophobacterales bacterium RBG_19FT_COMBO_59_10
29878417 29878417 PRJNA1111448_S_NODE_131191_length_245_cov_1.255814_g130368_i0 PRJNA1111448 131191 245 1.255814 3.0767443 Geopsychrobacter electrodiphilus 225196 Bacteria Bacteria 42.7 0.0365   NR WP_020678070.1 225196 g130368 i0 39.6 0.648979591836735 53 27 64.9 1 73 231 115 162 WP_020678070.1 XRE family transcriptional regulator [Geopsychrobacter electrodiphilus] diamond 159 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae Geopsychrobacter Geopsychrobacter electrodiphilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;