RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA1111448" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA1111448 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9145829 9145829 PRJNA1111448_S_NODE_60148_length_327_cov_2.421260_g59325_i0 PRJNA1111448 60148 327 2.42126 7.9175202 Ophiotheca pedata 1680578 Evosea other_Eukaryota 484 2.5599999999999998e-132   NTclustered gi|2250222264|gb|ON713372.1| 1680578 g59325 i0 94.044 94.9755351681957 319 19 98 0 2 320 915 1233 Perichaena pedata voucher MA81941 small subunit ribosomal RNA gene, partial sequence blastn 31057 484 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Ophiotheca Ophiotheca pedata
16794348 16794348 PRJNA1111448_S_NODE_101914_length_269_cov_2.841837_g101091_i0 PRJNA1111448 101914 269 2.841837 7.64454153 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 126 2e-34   NR XP_003293531.1 5786 g101091 i0 68.3 8.4089219330855 82 26 91.4 0 269 24 102 183 XP_003293531.1 ribosomal protein L11 [Dictyostelium purpureum] diamond 2262 127 0.992125984251969 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
28015523 28015523 PRJNA1111448_S_NODE_108105_length_263_cov_1.215789_g107282_i0 PRJNA1111448 108105 263 1.215789 3.19752507 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 51.6 3.69e-5   NR XP_640711.1 352472 g107282 i0 32.8 0.695817490494297 61 41 69.6 0 5 187 1098 1158 XP_640711.1 hypothetical protein DDB_G0281485 [Dictyostelium discoideum AX4] diamond 183 51.6 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
28583862 28583862 PRJNA1111448_S_NODE_80727_length_295_cov_1.162162_g79904_i0 PRJNA1111448 80727 295 1.162162 3.4283779 Dictyostelium purpureum 5786 Evosea other_Eukaryota 73.6 4.84e-13   NR XP_003287614.1 5786 g79904 i0 78.4 0.51864406779661 51 11 51.9 0 293 141 189 239 XP_003287614.1 calcium-regulated actin-bundling protein [Dictyostelium purpureum] diamond 153 73.6 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
29332735 29332735 PRJNA1111448_S_NODE_128989_length_246_cov_1.578035_g128166_i0 PRJNA1111448 128989 246 1.578035 3.8819661 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 89.4 1.6e-18   NR PRP88103.1 1890364 g128166 i0 49.4 1.89024390243902 79 39 96.3 1 1 237 1634 1711 PRP88103.1 intraflagellar transport protein [Planoprotostelium fungivorum] diamond 465 89.7 0.996655518394649 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30668119 30668119 PRJNA1111448_S_NODE_28273_length_417_cov_2.415698_g27450_i0 PRJNA1111448 28273 417 2.415698 10.07346066 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 114 1.78e-26   NR PRP74799.1 1890364 g27450 i0 48 0.884892086330935 123 62 88.5 1 415 47 392 512 PRP74799.1 actin binding protein [Planoprotostelium fungivorum] diamond 369 114 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31015687 31015687 PRJNA1111448_S_NODE_80035_length_296_cov_1.035874_g79212_i0 PRJNA1111448 80035 296 1.035874 3.06618704 Heterostelium album PN5 2086695 Evosea other_Eukaryota 65.1 1.01e-9   NR XP_020436557.1 670386 g79212 i0 51.5 0.668918918918919 66 32 66.9 0 1 198 1263 1328 XP_020436557.1 elongation protein 1 [Heterostelium album PN500] diamond 198 65.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
31837688 31837688 PRJNA1111448_S_NODE_86577_length_287_cov_2.093458_g85754_i0 PRJNA1111448 86577 287 2.093458 6.00822446 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 119 2.0899999999999996e-31   NR KYQ91511.1 361077 g85754 i0 60.4 0.951219512195122 91 36 95.1 0 285 13 127 217 KYQ91511.1 elongation factor 1b [Tieghemostelium lacteum] diamond 273 119 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
32588521 32588521 PRJNA1111448_S_NODE_104119_length_267_cov_1.484536_g103296_i0 PRJNA1111448 104119 267 1.484536 3.96371112 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 51.6 3.63e-5   NR KAH3765792.1 1580589 g103296 i0 37.5 3.70786516853933 88 54 98.9 1 2 265 376 462 KAH3765792.1 Poly(ADP-ribose) polymerase, regulatory domain [Pelomyxa schiedti] diamond 990 51.6 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
32723084 32723084 PRJNA1111448_S_NODE_121620_length_250_cov_1.740113_g120797_i0 PRJNA1111448 121620 250 1.740113 4.3502825 Heterostelium album PN5 2086695 Evosea other_Eukaryota 70.5 2.02e-12   NR XP_020437626.1 670386 g120797 i0 47.9 0.852 71 35 82.8 1 2 208 154 224 XP_020437626.1 vacuolar H+-ATPase E subunit [Heterostelium album PN500] diamond 213 70.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;