RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1111448" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1111448 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18070026 18070026 PRJNA1111448_S_NODE_86915_length_287_cov_1.177570_g86092_i0 PRJNA1111448 86915 287 1.17757 3.3796259 Helicobacter pylori 210 Bacteria Bacteria 111 4.32e-20   NTclustered gi|2222028449|gb|CP094103.1| 210 g86092 i0 94.521 24.0801393728223 73 2 25 2 214 286 1292583 1292653 Helicobacter pylori strain Hpfe077 chromosome, complete genome blastn 6911 111 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27510331 27510331 PRJNA1111448_S_NODE_94123_length_278_cov_2.131707_g93300_i0 PRJNA1111448 94123 278 2.131707 5.92614546 Helicobacter pylori 210 Bacteria Bacteria 86.7 1.01e-19   NR WP_322538256.1 210 g93300 i0 93 0.464028776978417 43 3 46.4 0 276 148 65 107 WP_322538256.1 hypothetical protein, partial [Helicobacter pylori] diamond 129 86.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;