RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1111448", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA1111448 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3573048 3573048 PRJNA1111448_S_NODE_124043_length_249_cov_0.960227_g123220_i0 PRJNA1111448 124043 249 0.960227 2.39096523 Sorangium 39643 Bacteria Bacteria 263 9.56e-66   NTclustered gi|1566478966|gb|CP012672.1| 56 g123220 i0 87.946 298.606425702811 224 25 89 2 3 224 3689619 3689396 Sorangium cellulosum strain So ce836 chromosome, complete genome blastn 74353 263 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
9145164 9145164 PRJNA1111448_S_NODE_124308_length_249_cov_0.875000_g123485_i0 PRJNA1111448 124308 249 0.875 2.17875 Anaeromyxobacter paludicola 2918171 Bacteria Bacteria 161 3.59e-35   NTclustered gi|2199271117|dbj|AP025592.1| 2918171 g123485 i0 84.524 114.562248995984 168 20 66 6 22 186 1383409 1383245 Anaeromyxobacter paludicola DNA, complete genome blastn 28526 161 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter paludicola
28173155 28173155 PRJNA1111448_S_NODE_56626_length_334_cov_1.475096_g55803_i0 PRJNA1111448 56626 334 1.475096 4.92682064 Polyangiaceae bacterium 2268199 Bacteria Bacteria 92.8 2.03e-19   NR HLK38846.1 2268199 g55803 i0 45.1 0.916167664670659 102 50 87.1 2 1 291 285 385 HLK38846.1 CHAP domain-containing protein [Polyangiaceae bacterium] diamond 306 92.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30541737 30541737 PRJNA1111448_S_NODE_69693_length_311_cov_1.294118_g68870_i0 PRJNA1111448 69693 311 1.294118 4.02470698 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.5 0.0414   NR MCC6751277.1 2026735 g68870 i0 34.5 0.530546623794212 55 30 52.1 2 102 263 319 368 MCC6751277.1 SH3 domain-containing protein [Deltaproteobacteria bacterium] diamond 165 43.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;