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contig_metadata

9 rows where bioproject = "PRJNA1111448" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 9 ✖

bioproject 1

  • PRJNA1111448 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2298443 2298443 PRJNA1111448_S_NODE_92862_length_280_cov_1.115942_g92039_i0 PRJNA1111448 92862 280 1.115942 3.1246376 root 1 Root_unresolved Root_unresolved 507 4.58e-139   NTclustered gi|1173658|gb|U36602.1|MLU36602 11786 g92039 i0 99.286 9 280 2 100 0 1 280 955 676 Murine leukemia virus gPr80 envelope polyprotein precursor (env) mRNA, complete cds blastn 2520 507 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
6596608 6596608 PRJNA1111448_S_NODE_94326_length_278_cov_1.502439_g93503_i0 PRJNA1111448 94326 278 1.502439 4.17678042 Betaretrovirus murmamtum 3427295 Viruses Viruses 508 1.26e-139   NTclustered gi|6911279|gb|AF228551.1|AF228551 46608 g93503 i0 99.64 37.6115107913669 278 1 100 0 1 278 1624 1347 Exogenous mouse mammary tumor virus HeJ complete proviral genome blastn 10456 508 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
10421209 10421209 PRJNA1111448_S_NODE_17409_length_487_cov_9.410628_g16592_i0 PRJNA1111448 17409 487 9.410628 45.82975836 Gammaretrovirus murleu 3428959 Viruses Viruses 821 0   NTclustered gi|332038|gb|K01204.1|MLVGPB 11786 g16592 i0 97.308 99.1457905544148 483 13 99 0 1 483 254 736 Murine leukemia virus B-tropic strain WN1802B gag-pol region blastn 48284 821 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
13775897 13775897 PRJNA1111448_S_NODE_21611_length_455_cov_3.594241_g20789_i0 PRJNA1111448 21611 455 3.594241 16.35379655 root 1 Root_unresolved Root_unresolved 804 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g20789 i0 99.105 98.1538461538462 447 4 98 0 9 455 2006 1560 Moloney murine leukemia virus, complete genome blastn 44660 804 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
15520505 15520505 PRJNA1111448_S_NODE_27773_length_419_cov_6.546243_g26950_i0 PRJNA1111448 27773 419 6.546243 27.42875817 Betaretrovirus murmamtum 3427295 Viruses Viruses 730 0   NTclustered gi|6911285|gb|AF228552.1|AF228552 46608 g26950 i0 98.095 27.2577565632458 420 7 100 1 1 419 2045 1626 Exogenous mouse mammary tumor virus C3H complete proviral genome blastn 11421 730 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
27352543 27352543 PRJNA1111448_S_NODE_141863_length_232_cov_2.528302_g141040_i0 PRJNA1111448 141863 232 2.528302 5.86566064 Human immunodeficiency virus 1 11676 Viruses Viruses 41.6 0.0384   NR AER38158.1 11676 g141040 i0 31.8 0.568965517241379 44 30 56.9 0 80 211 80 123 AER38158.1 envelope glycoprotein, partial [Human immunodeficiency virus 1] diamond 132 41.6 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
30090461 30090461 PRJNA1111448_S_NODE_87472_length_286_cov_1.732394_g86649_i0 PRJNA1111448 87472 286 1.732394 4.95464684 Gammaretrovirus 153135 Viruses Viruses 186 3.7e-52   NR NP_057933.2 11801 g86649 i0 97.9 13.951048951049 95 2 99.7 0 285 1 1168 1262 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 3990 186 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30668123 30668123 PRJNA1111448_S_NODE_56753_length_334_cov_0.942529_g55930_i0 PRJNA1111448 56753 334 0.942529 3.14804686 Marsupial endogenous gammaretrovirus 1 3386029 Viruses Viruses 89.7 3.29e-18   NR DBA62707.1 3386029 g55930 i0 46.2 0.817365269461078 91 43 81.7 1 275 3 1 85 DBA62707.1 TPA_asm: Gag [Marsupial endogenous gammaretrovirus 1] diamond 273 89.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Marsupial endogenous gammaretrovirus 1
30921095 30921095 PRJNA1111448_S_NODE_12034_length_552_cov_3.803758_g11239_i0 PRJNA1111448 12034 552 3.803758 20.99674416 Marsupial endogenous gammaretrovirus 1 3386029 Viruses Viruses 91.7 8.03e-18   NR DBA62707.1 3386029 g11239 i0 45.7 0.5 92 44 50 1 334 59 1 86 DBA62707.1 TPA_asm: Gag [Marsupial endogenous gammaretrovirus 1] diamond 276 91.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Marsupial endogenous gammaretrovirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;