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contig_metadata

13 rows where bioproject = "PRJNA1111448" and tax_kingdom = "Orthornavirae"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 13 ✖

bioproject 1

  • PRJNA1111448 · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
217351 217351 PRJNA1111448_S_NODE_115701_length_255_cov_2.027473_g114878_i0 PRJNA1111448 115701 255 2.027473 5.17005615 Wufeng shrew picornavirus 2 3084773 Viruses Viruses 52.8 0.023   NTclustered gi|2633074035|gb|OQ716065.1| 3084773 g114878 i0 100 0.109803921568627 28 0 11 0 103 130 9748 9721 MAG: Wufeng shrew picornavirus 2 isolate WF_Ch.smithii_picorna_3 polyprotein gene, complete cds blastn 28 52.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Wufeng shrew picornavirus 2
4044368 4044368 PRJNA1111448_S_NODE_128324_length_247_cov_0.885057_g127501_i0 PRJNA1111448 128324 247 0.885057 2.18609079 Betacoronavirus pandemicum 3418604 Viruses Viruses 73.1 1.71e-8   NTclustered gi|2557639027|emb|OY695365.1| 2697049 g127501 i0 97.674 16.2388663967611 43 0 17 1 2 44 19286 19245 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4011 73.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
5320401 5320401 PRJNA1111448_S_NODE_133085_length_244_cov_1.222222_g132262_i0 PRJNA1111448 133085 244 1.222222 2.98222168 Betacoronavirus pandemicum 3418604 Viruses Viruses 82.4 2.81e-11   NTclustered gi|2557415206|emb|OY652159.1| 2697049 g132262 i0 90.625 21.9180327868852 64 3 25 3 177 238 7114 7176 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 5348 82.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
8675843 8675843 PRJNA1111448_S_NODE_137347_length_242_cov_0.911243_g136524_i0 PRJNA1111448 137347 242 0.911243 2.20520806 Orthorubulavirus 2560195 Viruses Viruses 335 1.9299999999999993e-87   NTclustered gi|1806608684|gb|MN604146.1| 2560580 g136524 i0 99.457 64.0247933884298 184 1 76 0 1 184 296 113 Mammalian orthorubulavirus 5 isolate XJ033, complete genome blastn 15494 335 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthorubulavirus Orthorubulavirus mammalis
9145719 9145719 PRJNA1111448_S_NODE_4828_length_747_cov_2.074184_g4189_i0 PRJNA1111448 4828 747 2.074184 15.49415448 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 56.5 0.006   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g4189 i0 100 0.0789825970548862 30 0 4 0 718 747 85 56 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 59 56.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1
10420891 10420891 PRJNA1111448_S_NODE_114809_length_256_cov_1.683060_g113986_i0 PRJNA1111448 114809 256 1.68306 4.3086336 Chronazanb virus 3129852 Viruses Viruses 145 3.73e-30   NTclustered gi|2717318485|gb|PP172249.1| 3129852 g113986 i0 94.624 16.74609375 93 5 36 0 20 112 4485 4393 MAG: Chronazanb virus isolate CN1B_k141_35798 genomic sequence blastn 4287 145 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Chronazanb virus
11696232 11696232 PRJNA1111448_S_NODE_124810_length_249_cov_0.801136_g123987_i0 PRJNA1111448 124810 249 0.801136 1.99482864 Betacoronavirus pandemicum 3418604 Viruses Viruses 97.1 1.03e-15   NTclustered gi|2165836885|emb|OV197189.1| 2697049 g123987 i0 93.846 23.6987951807229 65 2 26 2 3 67 29973 29911 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 5901 97.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
12971896 12971896 PRJNA1111448_S_NODE_49291_length_349_cov_4.376812_g48468_i0 PRJNA1111448 49291 349 4.376812 15.27507388 Capillovirus mali 28347 Viruses Viruses 640 5.529999999999999e-179   NTclustered gi|1486551909|gb|MH144342.1| 33759 g48468 i0 99.713 99.7077363896848 349 1 100 0 1 349 6148 6496 Citrus tatter leaf virus isolate ASGV-1-HJY, complete genome blastn 34798 640 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
16795613 16795613 PRJNA1111448_S_NODE_96314_length_276_cov_1.098522_g95491_i0 PRJNA1111448 96314 276 1.098522 3.03192072 Betacoronavirus pandemicum 3418604 Viruses Viruses 93.5 1.5e-14   NTclustered gi|2165836885|emb|OV197189.1| 2697049 g95491 i0 95 19.6521739130435 60 1 22 2 1 60 29968 29911 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 5424 93.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
20619237 20619237 PRJNA1111448_S_NODE_59337_length_329_cov_1.152344_g58514_i0 PRJNA1111448 59337 329 1.152344 3.79121176 Betacoronavirus pandemicum 3418604 Viruses Viruses 73.1 2.38e-8   NTclustered gi|2557399578|emb|OY642376.1| 2697049 g58514 i0 92.308 13.3434650455927 52 2 16 2 1 52 19297 19248 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4390 73.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
30384190 30384190 PRJNA1111448_S_NODE_23353_length_444_cov_1.940701_g22531_i0 PRJNA1111448 23353 444 1.940701 8.61671244 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 59.7 4.04e-7   NR UNY42093.1 3003959 g22531 i0 66.7 0.263513513513513 39 13 26.4 0 327 443 25 63 UNY42093.1 MAG: polyprotein 1 [Picornavirales sp.] diamond 117 59.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3
30668126 30668126 PRJNA1111448_S_NODE_96213_length_276_cov_1.137931_g95390_i0 PRJNA1111448 96213 276 1.137931 3.14068956 Vallisneria spiralis virus 1 3351449 Viruses Viruses 143 6.439999999999998e-41   NR DBA60344.1 3351449 g95390 i0 88.6 0.858695652173913 79 9 85.9 0 276 40 131 209 DBA60344.1 TPA_asm: coat protein [Vallisneria spiralis virus 1] diamond 237 143 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Tepovirus Vallisneria spiralis virus 1
32691427 32691427 PRJNA1111448_S_NODE_73040_length_306_cov_0.991416_g72217_i0 PRJNA1111448 73040 306 0.991416 3.03373296 Picornaviridae sp. 1530251 Viruses Viruses 180 2.05e-51   NR URG14993.1 1530251 g72217 i0 78.4 1 102 22 100 0 1 306 34 135 URG14993.1 MAG: RNA dependent RNA polymerase, partial [Picornaviridae sp.] diamond 306 180 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Picornaviridae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;