RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1111448", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1111448 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
217533 217533 PRJNA1111448_S_NODE_131861_length_245_cov_0.895349_g131038_i0 PRJNA1111448 131861 245 0.895349 2.19360505 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 52.8 0.022   NTclustered gi|1752387487|ref|XM_030996563.1| 7668 g131038 i0 100 0.114285714285714 28 0 11 0 204 231 1563 1590 PREDICTED: Strongylocentrotus purpuratus tRNA:m(4)X modification enzyme TRM13 homolog (LOC575954), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
27857463 27857463 PRJNA1111448_S_NODE_138225_length_241_cov_1.708333_g137402_i0 PRJNA1111448 138225 241 1.708333 4.11708253 Anneissia japonica 1529436 Echinodermata other_Eukaryota 42.7 0.0337   NR XP_033110016.1 1529436 g137402 i0 38.6 0.547717842323652 44 26 54.8 1 108 239 81 123 XP_033110016.1 uncharacterized protein LOC117111228 [Anneissia japonica] diamond 132 42.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
28710179 28710179 PRJNA1111448_S_NODE_99767_length_272_cov_1.160804_g98944_i0 PRJNA1111448 99767 272 1.160804 3.15738688 Apostichopus japonicus 307972 Echinodermata other_Eukaryota 77.8 1.84e-14   NR PIK37538.1 307972 g98944 i0 45.1 3.31985294117647 71 39 78.3 0 270 58 267 337 PIK37538.1 putative adenosine kinase 1-like [Apostichopus japonicus] diamond 903 77.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Stichopodidae Apostichopus Apostichopus japonicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;