RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1111448", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA1111448 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20618631 20618631 PRJNA1111448_S_NODE_125457_length_248_cov_1.320000_g124634_i0 PRJNA1111448 125457 248 1.32 3.2736 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 222 1.62e-53   NTclustered gi|2874253736|emb|OY969578.1| 1672391 g124634 i0 84.052 85.0927419354839 232 36 93 1 1 231 3180695 3180926 MAG: uncultured Chloroflexia bacterium isolate MFD05674.bin.c.2 genome assembly, chromosome: 1 blastn 21103 222 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
26624606 26624606 PRJNA1111448_S_NODE_104181_length_267_cov_1.309278_g103358_i0 PRJNA1111448 104181 267 1.309278 3.49577226 Caldilineaceae bacterium 2614250 Bacteria Bacteria 154 8.2e-46   NR MBX3014206.1 2614250 g103358 i0 94.2 0.966292134831461 86 5 96.6 0 2 259 34 119 MBX3014206.1 50S ribosomal protein L21 [Caldilineaceae bacterium] diamond 258 154 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;