RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1111448", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1111448 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
218238 218238 PRJNA1111448_S_NODE_77301_length_299_cov_4.420354_g76478_i0 PRJNA1111448 77301 299 4.420354 13.21685846 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 180 1.22e-40   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g76478 i0 86.957 67.7190635451505 161 19 64 2 47 207 3694 3852 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 20248 180 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
218257 218257 PRJNA1111448_S_NODE_79021_length_297_cov_1.892857_g78198_i0 PRJNA1111448 79021 297 1.892857 5.62178529 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 294 4.15e-75   NTclustered gi|238617605|gb|FJ973380.1| 45107 g78198 i0 86.38 41.2828282828283 279 26 91 7 27 297 1621 1895 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 12261 294 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
5321276 5321276 PRJNA1111448_S_NODE_90245_length_283_cov_1.100000_g89422_i0 PRJNA1111448 90245 283 1.1 3.113 Cercomonas sp. 1979794 SAR_Eukaryotes SAR_Eukaryotes 490 4.67e-134   NTclustered gi|2651357797|gb|PP174310.1| 1979794 g89422 i0 97.88 100.378091872792 283 6 100 0 1 283 3778 4060 Cercomonas sp. isolate 1-1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 28407 490 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp.
10421160 10421160 PRJNA1111448_S_NODE_140549_length_237_cov_3.036585_g139726_i0 PRJNA1111448 140549 237 3.036585 7.19670645 uncultured Cercozoa 175275 SAR_Eukaryotes SAR_Eukaryotes 278 3.22e-70   NTclustered gi|113926804|emb|AM114812.1| 175275 g139726 i0 87.866 102.240506329114 239 25 100 4 1 237 159 395 Uncultured cercozoan partial 18S rRNA gene, clone WIM11 blastn 24231 278 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa
12972169 12972169 PRJNA1111448_S_NODE_78231_length_298_cov_2.137778_g77408_i0 PRJNA1111448 78231 298 2.137778 6.37057844 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 501 2.2899999999999993e-137   NTclustered gi|238617605|gb|FJ973380.1| 45107 g77408 i0 96.99 93.4697986577181 299 8 100 1 1 298 1576 1278 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 27854 501 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
22699553 22699553 PRJNA1111448_S_NODE_22598_length_448_cov_10.056000_g21776_i0 PRJNA1111448 22598 448 10.056 45.05088 Sandona 1239209 SAR_Eukaryotes SAR_Eukaryotes 822 0   NTclustered gi|2163362299|dbj|LC663795.1| 563755 g21776 i0 99.777 100.064732142857 448 1 100 0 1 448 1023 576 Sandona mutans Flagella An1019C gene for 18S rRNA, partial sequence blastn 44829 822 1 Eukaryota Sar   Cercozoa   Glissomonadida Sandonidae Sandona Sandona mutans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;