RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1111448", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1111448 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9146107 9146107 PRJNA1111448_S_NODE_85768_length_288_cov_2.209302_g84945_i0 PRJNA1111448 85768 288 2.209302 6.36278976 Licmophora juergensii 210598 SAR_Eukaryotes SAR_Eukaryotes 150 9.18e-32   NTclustered gi|2862228907|gb|PQ645541.1| 210598 g84945 i0 93.939 38.8715277777778 99 6 34 0 190 288 3568 3470 Licmophora juergensii isolate AGSB0420 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11195 150 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Licmophorales Licmophoraceae Licmophora Licmophora juergensii
18068870 18068870 PRJNA1111448_S_NODE_101095_length_270_cov_1.954315_g100272_i0 PRJNA1111448 101095 270 1.954315 5.2766505 Nitzschia traheaformis 1881117 SAR_Eukaryotes SAR_Eukaryotes 87.9 6.78e-13   NTclustered gi|2073953246|gb|MW849269.1| 1881117 g100272 i0 77.326 2.34814814814815 172 23 63 7 93 262 46488 46645 Nitzschia traheaformis isolate Qingdao in China mitochondrion, complete genome blastn 634 87.9 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia traheaformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;