RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1111448", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1111448 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9145923 9145923 PRJNA1111448_S_NODE_68408_length_313_cov_1.604167_g67585_i0 PRJNA1111448 68408 313 1.604167 5.02104271 Planctomycetes bacterium syqfu 2896527 Bacteria Bacteria 327 4.339999999999999e-85   NTclustered gi|2155219436|gb|CP087563.1| 2896527 g67585 i0 85.804 76.8242811501597 317 35 100 10 1 313 5331450 5331760 Planctomycetes bacterium syqfu chromosome, complete genome blastn 24046 327 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetes bacterium syqfu
16794805 16794805 PRJNA1111448_S_NODE_143434_length_226_cov_2.013072_g142611_i0 PRJNA1111448 143434 226 2.013072 4.54954272 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 311 3.01e-80   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g142611 i0 91.556 156.663716814159 225 19 99 0 1 225 2002078 2001854 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 35406 311 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
29815013 29815013 PRJNA1111448_S_NODE_90231_length_283_cov_1.100000_g89408_i0 PRJNA1111448 90231 283 1.1 3.113 Isosphaeraceae bacterium 2691532 Bacteria Bacteria 86.3 1.19e-17   NR HWE38221.1 2691532 g89408 i0 55.6 0.858657243816254 81 36 85.9 0 39 281 10 90 HWE38221.1 hypothetical protein [Isosphaeraceae bacterium] diamond 243 86.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae   Isosphaeraceae bacterium
30573108 30573108 PRJNA1111448_S_NODE_100653_length_271_cov_1.166667_g99830_i0 PRJNA1111448 100653 271 1.166667 3.16166757 Planctomycetota bacterium 2026780 Bacteria Bacteria 49.7 1.83e-4   NR HZN58905.1 2026780 g99830 i0 35.1 0.85239852398524 77 46 83 2 245 21 562 636 HZN58905.1 Kazal-type serine protease inhibitor domain-containing protein [Planctomycetota bacterium] diamond 231 49.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;