RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1111448", tax_clade = "Opisthokonta" and tax_phylum = "Blastocladiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA1111448 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5320491 5320491 PRJNA1111448_S_NODE_141005_length_235_cov_3.598765_g140182_i0 PRJNA1111448 141005 235 3.598765 8.45709775 Blastocladiella emersonii ATCC 22665 1313167 Fungi Fungi 66.6 7.45e-12   NR KAI9189879.1 1313167 g140182 i0 55.7 2.65531914893617 70 28 86.8 2 30 233 57 125 KAI9189879.1 60S ribosomal protein L21A [Blastocladiella emersonii ATCC 22665] diamond 624 66.6 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
7870726 7870726 PRJNA1111448_S_NODE_35687_length_388_cov_1.866667_g34864_i0 PRJNA1111448 35687 388 1.866667 7.24266796 Catenaria sp. 2420186 Fungi Fungi 392 1.9199999999999998e-104   NTclustered gi|1866582684|gb|MT730859.1| 2420186 g34864 i0 85.347 41.3247422680412 389 46 100 7 1 388 4101 4479 Catenaria sp. isolate JEL0871 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16034 392 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria sp.
21894481 21894481 PRJNA1111448_S_NODE_143718_length_219_cov_7.020548_g142895_i0 PRJNA1111448 143718 219 7.020548 15.37500012 uncultured Blastocladiomycota 587038 Fungi Fungi 405 1.29e-108   NTclustered gi|291501085|gb|GU598466.1| 587038 g142895 i0 100 100.397260273973 219 0 100 0 1 219 156 374 Uncultured Blastocladiomycota clone OF3P2D11 18S ribosomal RNA gene, partial sequence blastn 21987 405 1 Eukaryota Opisthokonta Fungi Blastocladiomycota         uncultured Blastocladiomycota
25248973 25248973 PRJNA1111448_S_NODE_14580_length_518_cov_1.804494_g13772_i0 PRJNA1111448 14580 518 1.804494 9.34727892 Catenaria 109875 Fungi Fungi 254 1.3e-62   NTclustered gi|321173776|gb|HQ888757.1| 945977 g13772 i0 86.957 32.6525096525097 230 24 54 6 293 518 738 965 Catenaria sp. JEL 589 28S ribosomal RNA gene, partial sequence blastn 16914 254 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria sp. JEL 589

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;