RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where bioproject = "PRJNA1111448", tax_clade = "Discoba" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 17 ✖

tax_clade 1

  • Discoba · 17 ✖

bioproject 1

  • PRJNA1111448 · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
217855 217855 PRJNA1111448_S_NODE_35301_length_389_cov_4.382911_g34478_i0 PRJNA1111448 35301 389 4.382911 17.04952379 Entosiphon sulcatum 101493 Euglenozoa other_Eukaryota 486 8.599999999999999e-133   NTclustered gi|37542663|gb|AY061999.1| 101493 g34478 i0 90.489 4.02056555269923 368 35 95 0 22 389 1777 2144 Entosiphon sulcatum small subunit ribosomal RNA gene, partial sequence blastn 1564 486 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sulcatum
2298205 2298205 PRJNA1111448_S_NODE_45202_length_359_cov_5.297203_g44379_i0 PRJNA1111448 45202 359 5.297203 19.01695877 Trypanosoma 5690 Euglenozoa other_Eukaryota 364 3.849999999999998e-96   NTclustered gi|1673141461|ref|XR_003828664.1| 83891 g44379 i0 97.209 89.924791086351 215 6 60 0 1 215 5186 4972 Trypanosoma conorhini 28S ribosomal RNA (Tco025E_06705), rRNA blastn 32283 364 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma conorhini
2767884 2767884 PRJNA1111448_S_NODE_103943_length_267_cov_1.773196_g103120_i0 PRJNA1111448 103943 267 1.773196 4.73443332 Trypanosoma brucei 5691 Euglenozoa other_Eukaryota 52.8 0.024   NTclustered gi|788002453|ref|XM_011774696.1| 679716 g103120 i0 100 0.104868913857678 28 0 10 0 68 95 425 398 Trypanosoma brucei gambiense DAL972 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei
2767951 2767951 PRJNA1111448_S_NODE_110503_length_260_cov_2.390374_g109680_i0 PRJNA1111448 110503 260 2.390374 6.2149724 Scytomonas saepesedens 1732443 Euglenozoa other_Eukaryota 315 2.7399999999999992e-81   NTclustered gi|937541989|gb|KP306755.1| 1732443 g109680 i0 95.431 46.0807692307692 197 9 76 0 30 226 1175 1371 Scytomonas saepesedens 18S ribosomal RNA gene, partial sequence blastn 11981 315 1 Eukaryota Discoba   Euglenozoa Euglenida Petalomonadida Scytomonadidae Scytomonas Scytomonas saepesedens
4044785 4044785 PRJNA1111448_S_NODE_36784_length_384_cov_2.485531_g35961_i0 PRJNA1111448 36784 384 2.485531 9.54443904 Trypanosoma brucei 5691 Euglenozoa other_Eukaryota 52.8 0.037   NTclustered gi|788021951|ref|XM_011780894.1| 679716 g35961 i0 100 0.0729166666666667 28 0 7 0 357 384 163 136 Trypanosoma brucei gambiense DAL972 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei
5320518 5320518 PRJNA1111448_S_NODE_14905_length_514_cov_3.183673_g14096_i0 PRJNA1111448 14905 514 3.183673 16.36407922 Entosiphon sp. 1921133 Euglenozoa other_Eukaryota 693 0   NTclustered gi|1547024950|gb|MK213406.1| 1921133 g14096 i0 91.103 21.1284046692607 517 39 100 7 1 514 1003 491 Entosiphon sp. strain ESC small subunit ribosomal RNA, partial sequence blastn 10860 693 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sp.
5320652 5320652 PRJNA1111448_S_NODE_30465_length_407_cov_25.029940_g29642_i0 PRJNA1111448 30465 407 25.02994 101.8718558 Neobodo designis 312471 Euglenozoa other_Eukaryota 671 0   NTclustered gi|77994650|gb|DQ207588.1| 312471 g29642 i0 96.333 98.7813267813268 409 13 100 2 1 407 429 21 Neobodo designis strain HFCC335 18S ribosomal RNA gene, partial sequence blastn 40204 671 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
8676279 8676279 PRJNA1111448_S_NODE_88287_length_285_cov_1.650943_g87464_i0 PRJNA1111448 88287 285 1.650943 4.70518755 Entosiphon 101492 Euglenozoa other_Eukaryota 309 1.41e-79   NTclustered gi|41400272|gb|AY425008.1| 259048 g87464 i0 90.598 38.6701754385965 234 21 82 1 53 285 300 533 Entosiphon sp. TCS-2003 18S ribosomal RNA gene, partial sequence blastn 11021 309 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sp. TCS 2003
16794435 16794435 PRJNA1111448_S_NODE_111074_length_260_cov_1.235294_g110251_i0 PRJNA1111448 111074 260 1.235294 3.2117644 Decastava sp. 3023511 Euglenozoa other_Eukaryota 411 3.39e-110   NTclustered gi|2431695564|gb|OQ331009.1| 3023511 g110251 i0 95.038 44.0461538461538 262 11 100 2 1 260 1132 871 Decastava sp. isolate SPO2 small subunit ribosomal RNA gene, partial sequence blastn 11452 411 1 Eukaryota Discoba   Euglenozoa Euglenida     Decastava Decastava sp.
20149142 20149142 PRJNA1111448_S_NODE_42996_length_365_cov_3.075342_g42173_i0 PRJNA1111448 42996 365 3.075342 11.2249983 Entosiphon 101492 Euglenozoa other_Eukaryota 488 2.2299999999999993e-133   NTclustered gi|37542663|gb|AY061999.1| 101493 g42173 i0 90.959 6.09315068493151 365 29 100 4 1 365 1081 1441 Entosiphon sulcatum small subunit ribosomal RNA gene, partial sequence blastn 2224 488 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sulcatum
21894225 21894225 PRJNA1111448_S_NODE_12098_length_551_cov_3.527197_g11303_i0 PRJNA1111448 12098 551 3.527197 19.43485547 Neobodo designis 312471 Euglenozoa other_Eukaryota 937 0   NTclustered gi|62871458|gb|AY998645.1| 312471 g11303 i0 97.288 100.382940108893 553 13 100 2 1 551 1499 2051 Neobodo designis strain SCCAP BD51 18S ribosomal RNA gene, partial sequence blastn 55311 937 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
23170029 23170029 PRJNA1111448_S_NODE_1579_length_1090_cov_8.858407_g1252_i0 PRJNA1111448 1579 1090 8.858407 96.5566363 Neobodo designis 312471 Euglenozoa other_Eukaryota 1716 0   NTclustered gi|62871458|gb|AY998645.1| 312471 g1252 i0 95.064 100.588073394495 1094 48 100 5 1 1090 421 1512 Neobodo designis strain SCCAP BD51 18S ribosomal RNA gene, partial sequence blastn 109641 1716 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
23974934 23974934 PRJNA1111448_S_NODE_19239_length_472_cov_9.310777_g18418_i0 PRJNA1111448 19239 472 9.310777 43.94686744 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 595 1.6899999999999995e-165   NTclustered gi|2026667531|dbj|LC618031.1| 67003 g18418 i0 89.809 136.625 471 39 98 6 11 472 4825 4355 Trypanosoma theileri OSK-16 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, partial and complete sequence blastn 64487 601 0.990016638935108 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
23974939 23974939 PRJNA1111448_S_NODE_20979_length_460_cov_1.780362_g20157_i0 PRJNA1111448 20979 460 1.780362 8.1896652 Leishmania 5658 Euglenozoa other_Eukaryota 390 8.329999999999999e-104   NTclustered gi|440222433|gb|JX030101.1| 5660 g20157 i0 83.297 101.826086956522 455 45 93 18 30 457 1 451 Leishmania braziliensis isolate LbrET.rRNA.25 28S ribosomal RNA (LSU-beta), partial sequence blastn 46840 390 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
27121930 27121930 PRJNA1111448_S_NODE_135122_length_243_cov_0.905882_g134299_i0 PRJNA1111448 135122 243 0.905882 2.20129326 Leishmania 5658 Euglenozoa other_Eukaryota 45.1 0.00536   NR XP_010702936.1 5679 g134299 i0 56.3 0.790123456790123 32 14 39.5 0 5 100 304 335 XP_010702936.1 hypothetical protein LPMP_345170 [Leishmania panamensis] diamond 192 45.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania panamensis
27636652 27636652 PRJNA1111448_S_NODE_60484_length_327_cov_0.909449_g59661_i0 PRJNA1111448 60484 327 0.909449 2.97389823 Trypanosoma conorhini 83891 Euglenozoa other_Eukaryota 73.2 3.23e-13   NR XP_029224128.1 83891 g59661 i0 59.6 1.04587155963303 57 23 52.3 0 18 188 109 165 XP_029224128.1 large subunit ribosomal protein LP0 [Trypanosoma conorhini] diamond 342 73.2 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma conorhini
28931101 28931101 PRJNA1111448_S_NODE_68608_length_313_cov_0.962500_g67785_i0 PRJNA1111448 68608 313 0.9625 3.012625 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 72.4 5.26e-14   NR KAJ9454858.1 91374 g67785 i0 51.6 0.613418530351438 64 31 61.3 0 2 193 35 98 KAJ9454858.1 10 kDa chaperonin [Diplonema papillatum] diamond 192 72.4 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;