RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where bioproject = "PRJNA1111448", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 19 ✖

tax_clade 1

  • Amoebozoa · 19 ✖

bioproject 1

  • PRJNA1111448 · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
217785 217785 PRJNA1111448_S_NODE_27261_length_422_cov_2.315186_g26438_i0 PRJNA1111448 27261 422 2.315186 9.77008492 Vannella primoblina 2761562 Discosea other_Eukaryota 361 5.949999999999999e-95   NTclustered gi|1887066342|gb|MT863734.1| 2761562 g26438 i0 82.517 53.0687203791469 429 58 100 16 1 422 645 1063 Vannella primoblina strain Van79 small subunit ribosomal RNA gene, partial sequence blastn 22395 361 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella primoblina
1493012 1493012 PRJNA1111448_S_NODE_82762_length_292_cov_1.675799_g81939_i0 PRJNA1111448 82762 292 1.675799 4.89333308 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 473 4.8699999999999987e-129   NTclustered gi|330902856|gb|JF298254.1| 1017091 g81939 i0 95.89 45.2842465753425 292 12 100 0 1 292 1041 1332 Cochliopodium larifeili clone 902 18S ribosomal RNA gene, partial sequence blastn 13223 473 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
2298073 2298073 PRJNA1111448_S_NODE_20002_length_466_cov_13.798982_g19180_i0 PRJNA1111448 20002 466 13.798982 64.30325612 Ripella 1217112 Discosea other_Eukaryota 688 0   NTclustered gi|1269228349|gb|MF683474.1| 2047821 g19180 i0 93.603 100.733905579399 469 16 100 10 1 466 997 540 Ripella platypodia clone 23.4.22 18S ribosomal RNA gene, partial sequence blastn 46942 688 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
4044948 4044948 PRJNA1111448_S_NODE_54284_length_339_cov_0.860902_g53461_i0 PRJNA1111448 54284 339 0.860902 2.91845778 Korotnevella monacantholepis 200893 Discosea other_Eukaryota 217 1.07e-51   NTclustered gi|21913686|gb|AY121854.1| 200893 g53461 i0 83.772 40.3805309734513 228 31 66 6 1 224 2139 1914 Korotnevella monacantholepis strain ATCC 50819 small subunit ribosomal RNA gene, complete sequence blastn 13689 217 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Korotnevella Korotnevella monacantholepis
6595804 6595804 PRJNA1111448_S_NODE_143766_length_218_cov_5.827586_g142943_i0 PRJNA1111448 143766 218 5.827586 12.70413748 Vannella primoblina 2761562 Discosea other_Eukaryota 243 1.0700000000000001e-59   NTclustered gi|1887066342|gb|MT863734.1| 2761562 g142943 i0 87.442 84.1697247706422 215 21 98 5 1 213 338 128 Vannella primoblina strain Van79 small subunit ribosomal RNA gene, partial sequence blastn 18349 243 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella primoblina
9950608 9950608 PRJNA1111448_S_NODE_11008_length_568_cov_11.070707_g10221_i0 PRJNA1111448 11008 568 11.070707 62.88161576 Vannellidae 95227 Discosea other_Eukaryota 507 9.95e-139   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g10221 i0 96.429 48.2359154929577 308 10 54 1 1 308 1335 1641 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 27398 508 0.998031496062992 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
10421316 10421316 PRJNA1111448_S_NODE_2709_length_908_cov_442.601198_g2262_i0 PRJNA1111448 2709 908 442.601198 4018.81887784 Vannella septentrionalis 197531 Discosea other_Eukaryota 909 0   NTclustered gi|300078499|gb|GU001161.1| 197531 g2262 i0 85.097 43.7323788546256 926 98 100 31 1 908 3153 2250 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 39709 909 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
11697106 11697106 PRJNA1111448_S_NODE_83170_length_291_cov_7.431193_g82347_i0 PRJNA1111448 83170 291 7.431193 21.62477163 Vannella mustalahtiana 2841357 Discosea other_Eukaryota 302 2.42e-77   NTclustered gi|2047416623|gb|MZ329078.1| 2841357 g82347 i0 98.276 103.343642611684 174 0 100 3 1 171 1551 1378 Vannella sp. AKud-2021a clone NGD3297 small subunit ribosomal RNA gene, partial sequence blastn 30073 302 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella mustalahtiana
14246268 14246268 PRJNA1111448_S_NODE_110552_length_260_cov_2.069519_g109729_i0 PRJNA1111448 110552 260 2.069519 5.3807494 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 414 2.62e-111   NTclustered gi|330902858|gb|JF298255.1| 1017091 g109729 i0 95.785 60.0230769230769 261 3 100 6 1 260 777 1030 Cochliopodium larifeili clone 904 18S ribosomal RNA gene, partial sequence blastn 15606 414 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
14247346 14247346 PRJNA1111448_S_NODE_86692_length_287_cov_1.654206_g85869_i0 PRJNA1111448 86692 287 1.654206 4.74757122 Ripella sp. GP2 1217115 Discosea other_Eukaryota 411 3.8e-110   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g85869 i0 94.465 86.4773519163763 271 8 93 5 1 268 269 3 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 24819 411 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
15519885 15519885 PRJNA1111448_S_NODE_102053_length_269_cov_2.071429_g101230_i0 PRJNA1111448 102053 269 2.071429 5.57214401 Korotnevella stella 218663 Discosea other_Eukaryota 257 4.87e-64   NTclustered gi|27803579|gb|AY183893.1| 218663 g101230 i0 85.556 68.8401486988848 270 11 100 17 1 269 1136 894 Korotnevella stella small subunit ribosomal RNA gene, complete sequence blastn 18518 257 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Korotnevella Korotnevella stella
15520962 15520962 PRJNA1111448_S_NODE_74633_length_303_cov_2.095652_g73810_i0 PRJNA1111448 74633 303 2.095652 6.34982556 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 527 3.8499999999999985e-145   NTclustered gi|330902861|gb|JF298256.1| 1017091 g73810 i0 98.026 63 304 4 100 2 1 303 509 207 Cochliopodium larifeili clone 907 18S ribosomal RNA gene, partial sequence blastn 19089 527 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
16794619 16794619 PRJNA1111448_S_NODE_12774_length_540_cov_281.083512_g11974_i0 PRJNA1111448 12774 540 281.083512 1517.8509648 Vannella mustalahtiana 2841357 Discosea other_Eukaryota 887 0   NTclustered gi|2047416623|gb|MZ329078.1| 2841357 g11974 i0 96.798 99.3481481481482 531 17 98 0 1 531 531 1 Vannella sp. AKud-2021a clone NGD3297 small subunit ribosomal RNA gene, partial sequence blastn 53648 887 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella mustalahtiana
18069245 18069245 PRJNA1111448_S_NODE_13535_length_530_cov_177.538293_g12730_i0 PRJNA1111448 13535 530 177.538293 940.9529529 Vannella septentrionalis 197531 Discosea other_Eukaryota 331 5.97e-86   NTclustered gi|300078499|gb|GU001161.1| 197531 g12730 i0 82.353 45.0169811320755 391 51 85 13 127 512 4355 3978 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23859 331 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
21894480 21894480 PRJNA1111448_S_NODE_143638_length_222_cov_4.093960_g142815_i0 PRJNA1111448 143638 222 4.09396 9.0885912 Ripella sp. GP2 1217115 Discosea other_Eukaryota 399 6.099999999999999e-107   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g142815 i0 99.099 90.6936936936937 222 2 100 0 1 222 184 405 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 20134 399 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
23169959 23169959 PRJNA1111448_S_NODE_138599_length_241_cov_1.345238_g137776_i0 PRJNA1111448 138599 241 1.345238 3.24202358 Vannellidae sp. 2491907 Discosea other_Eukaryota 165 2.67e-36   NTclustered gi|1523769313|gb|MH535955.1| 2491907 g137776 i0 80.252 54.9668049792531 238 31 98 12 6 240 444 668 Vannellidae sp. strain 147SVA_C2 18S ribosomal RNA gene, partial sequence; mitochondrial blastn 13247 165 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   Vannellidae sp.
27162437 27162437 PRJNA1111448_S_NODE_79702_length_296_cov_2.035874_g78879_i0 PRJNA1111448 79702 296 2.035874 6.02618704 Vannella simplex 197532 Discosea other_Eukaryota 77.4 1.88e-15   NR AUO29161.1 197532 g78879 i0 52.2 0.699324324324324 69 33 69.9 0 87 293 31 99 AUO29161.1 ribosomal protein L16 [Vannella simplex] diamond 207 77.4 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
27920597 27920597 PRJNA1111448_S_NODE_123085_length_249_cov_3.107955_g122262_i0 PRJNA1111448 123085 249 3.107955 7.73880795 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 78.2 2.87e-16   NR XP_004348720.1 1257118 g122262 i0 52 0.903614457831325 75 32 90.4 2 1 225 60 130 XP_004348720.1 actin binding protein [Acanthamoeba castellanii str. Neff] diamond 225 78.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31204826 31204826 PRJNA1111448_S_NODE_105935_length_265_cov_1.604167_g105112_i0 PRJNA1111448 105935 265 1.604167 4.25104255 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 75.5 1.47e-13   NR XP_004334027.1 1257118 g105112 i0 47.4 0.860377358490566 76 37 86 1 264 37 555 627 XP_004334027.1 alphaactinin, putative [Acanthamoeba castellanii str. Neff] diamond 228 75.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;