RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1111146" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1111146 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27469958 27469958 PRJNA1111146_P_NODE_157603_length_218_cov_1.345455_g156465_i0 PRJNA1111146 157603 218 1.345455 2.9330919 Fungi 4751 Fungi Fungi 105 2.06e-25   NR KAI8899960.1 382532 g156465 i0 73.9 3.79816513761468 69 18 95 0 217 11 218 286 KAI8899960.1 WD40-repeat-containing domain protein [Globomyces pollinis-pini] diamond 828 105 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Globomycetaceae Globomyces Globomyces pollinis-pini
29088968 29088968 PRJNA1111146_P_NODE_392788_length_179_cov_1.920635_g391650_i0 PRJNA1111146 392788 179 1.920635 3.43793665 Geranomyces variabilis 109894 Fungi Fungi 52.4 6.27e-6   NR KAJ3145719.1 109894 g391650 i0 91.7 4.6927374301676 24 2 40.2 0 179 108 329 352 KAJ3145719.1 minichromosome maintenance protein 5 [Geranomyces variabilis] diamond 840 52.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces variabilis
32619734 32619734 PRJNA1111146_P_NODE_119040_length_234_cov_1.088398_g117902_i0 PRJNA1111146 119040 234 1.088398 2.54685132 Fungi 4751 Fungi Fungi 116 2.98e-28   NR TPX57749.1 117820 g117902 i0 61.5 17.8076923076923 78 30 100 0 1 234 139 216 TPX57749.1 alpha,alpha-trehalase [Spizellomyces sp. 'palustris'] diamond 4167 116 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces sp. 'palustris'

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;