RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1111146", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 6 ✖

tax_kingdom 1

  • Bacillati · 6 ✖

bioproject 1

  • PRJNA1111146 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6594385 6594385 PRJNA1111146_P_NODE_285486_length_189_cov_2.308824_g284348_i0 PRJNA1111146 285486 189 2.308824 4.36367736 Metamycoplasma orale 2121 Bacteria Bacteria 296 6.79e-76   NTclustered gi|1563679895|emb|LR214940.1| 2121 g284348 i0 97.143 0.925925925925926 175 5 93 0 15 189 406834 406660 Mycoplasma orale strain NCTC10112 genome assembly, chromosome: 1 blastn 175 296 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma orale
9143777 9143777 PRJNA1111146_P_NODE_260368_length_194_cov_1.609929_g259230_i0 PRJNA1111146 260368 194 1.609929 3.12326226 Metamycoplasma orale 2121 Bacteria Bacteria 353 4.1e-93   NTclustered gi|1563679895|emb|LR214940.1| 2121 g259230 i0 99.485 1 194 1 100 0 1 194 171139 171332 Mycoplasma orale strain NCTC10112 genome assembly, chromosome: 1 blastn 194 353 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma orale
9144218 9144218 PRJNA1111146_P_NODE_356248_length_182_cov_0.875969_g355110_i0 PRJNA1111146 356248 182 0.875969 1.59426358 Metamycoplasma orale 2121 Bacteria Bacteria 337 3.82e-88   NTclustered gi|1563680538|emb|LR214941.1| 2121 g355110 i0 100 2 182 0 100 0 1 182 7082 7263 Mycoplasma orale strain NCTC10112 genome assembly, plasmid: 2 blastn 364 337 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma orale
12969838 12969838 PRJNA1111146_P_NODE_226551_length_201_cov_1.364865_g225413_i0 PRJNA1111146 226551 201 1.364865 2.74337865 Metamycoplasma orale 2121 Bacteria Bacteria 361 2.5599999999999998e-95   NTclustered gi|1563679895|emb|LR214940.1| 2121 g225413 i0 99.005 52.0696517412935 201 2 100 0 1 201 199657 199857 Mycoplasma orale strain NCTC10112 genome assembly, chromosome: 1 blastn 10466 361 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma orale
13775063 13775063 PRJNA1111146_P_NODE_274931_length_191_cov_2.108696_g273793_i0 PRJNA1111146 274931 191 2.108696 4.02760936 Metamycoplasmataceae 2895623 Bacteria Bacteria 143 9.479999999999999e-30   NTclustered gi|1563788636|emb|LR214955.1| 2115 g273793 i0 81.503 4.3979057591623 173 32 91 0 7 179 429759 429931 Mycoplasma fermentans strain NCTC10117 genome assembly, chromosome: 1 blastn 840 143 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis fermentans
31236771 31236771 PRJNA1111146_P_NODE_96215_length_245_cov_1.916667_g95077_i0 PRJNA1111146 96215 245 1.916667 4.69583415 Acholeplasmatales bacterium 2053494 Bacteria Bacteria 119 1.47e-32   NR MBR6287808.1 2053494 g95077 i0 61.7 2.97551020408163 81 31 99.2 0 244 2 31 111 MBR6287808.1 hypothetical protein [Acholeplasmatales bacterium] diamond 729 119 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales     Acholeplasmatales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;