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contig_metadata

24 rows where bioproject = "PRJNA1111146" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 24 ✖

bioproject 1

  • PRJNA1111146 · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2296948 2296948 PRJNA1111146_P_NODE_169202_length_214_cov_1.260870_g168064_i0 PRJNA1111146 169202 214 1.26087 2.6982618 Chlorophyta 3041 Plants Plants 396 7.559999999999996e-106   NTclustered gi|1518373083|gb|MK201746.1| 152768 g168064 i0 100 99.1728971962617 214 0 100 0 1 214 991 778 Diplosphaera chodatii strain KZ-26-5 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21223 396 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera chodatii
3572264 3572264 PRJNA1111146_P_NODE_253543_length_195_cov_3.500000_g252405_i0 PRJNA1111146 253543 195 3.5 6.825 Trebouxia 13786 Plants Plants 361 2.46e-95   NTclustered gi|94448695|emb|AJ969523.1| 285713 g252405 i0 100 99.8 195 0 100 0 1 195 1391 1197 Uncultured Trebouxia photobiont 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 26S rRNA gene (partial), isolate L-43 blastn 19461 361 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
4043034 4043034 PRJNA1111146_P_NODE_282104_length_190_cov_1.635036_g280966_i0 PRJNA1111146 282104 190 1.635036 3.1065684 Volvox carteri 3067 Plants Plants 52.8 0.016   NTclustered gi|302840865|ref|XM_002951933.1| 3068 g280966 i0 100 0.147368421052632 28 0 15 0 116 143 67 40 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_105299), partial mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
5319848 5319848 PRJNA1111146_P_NODE_45805_length_294_cov_2.161826_g44668_i0 PRJNA1111146 45805 294 2.161826 6.35576844 Stichococcus bacillaris 37433 Plants Plants 318 2.439999999999999e-82   NTclustered gi|371782093|emb|HE610125.1| 37433 g44668 i0 96.842 14.187074829932 190 6 65 0 105 294 7182 6993 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 4171 318 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
6125369 6125369 PRJNA1111146_P_NODE_98565_length_244_cov_1.345550_g97427_i0 PRJNA1111146 98565 244 1.34555 3.283142 Trebouxia 13786 Plants Plants 451 1.86e-122   NTclustered gi|255653890|gb|FJ804758.1| 664443 g97427 i0 100 107.91393442623 244 0 100 0 1 244 1458 1701 Trebouxia australis strain SAG 2205 large subunit ribosomal RNA gene, partial sequence; and hypothetical protein gene, complete cds; chloroplast blastn 26331 451 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia australis
6594065 6594065 PRJNA1111146_P_NODE_214766_length_203_cov_1.553333_g213628_i0 PRJNA1111146 214766 203 1.553333 3.15326599 Chloroidium ellipsoideum 63676 Plants Plants 348 2.0100000000000006e-91   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g213628 i0 97.537 100.64039408867 203 5 100 0 1 203 2276 2074 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 20430 348 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
9949659 9949659 PRJNA1111146_P_NODE_15108_length_411_cov_3.148045_g13974_i0 PRJNA1111146 15108 411 3.148045 12.93846495 Trebouxia 13786 Plants Plants 743 0   NTclustered gi|1273623725|gb|KY033354.1| 285713 g13974 i0 99.27 100.216545012165 411 3 100 0 1 411 6600 6190 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 41189 743 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
11695840 11695840 PRJNA1111146_P_NODE_75890_length_260_cov_1.091787_g74752_i0 PRJNA1111146 75890 260 1.091787 2.8386462 Auxenochlorella pyrenoidosa 3078 Plants Plants 481 2.55e-131   NTclustered gi|1201359271|gb|MF040793.1| 3078 g74752 i0 100 100.873076923077 260 0 100 0 1 260 269 528 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 26227 481 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
16792734 16792734 PRJNA1111146_P_NODE_120894_length_233_cov_1.250000_g119756_i0 PRJNA1111146 120894 233 1.25 2.9125 Trebouxia angustilobata 664442 Plants Plants 431 2.2899999999999996e-116   NTclustered gi|255654043|gb|FJ694755.1| 664442 g119756 i0 100 131.618025751073 233 0 100 0 1 233 3109 2877 Trebouxia angustilobata strain SAG 2204 23S ribosomal RNA gene, partial sequence; and hypothetical protein genes, complete cds; chloroplast blastn 30667 431 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia angustilobata
16793676 16793676 PRJNA1111146_P_NODE_354254_length_182_cov_0.883721_g353116_i0 PRJNA1111146 354254 182 0.883721 1.60837222 root 1 Root_unresolved Root_unresolved 87 4.08e-18   NR KAL4853082.1 3077 g353116 i0 83.3 8.25824175824176 42 7 69.2 0 1 126 84 125 KAL4853082.1 Ribonuclease J [Chlorella vulgaris] diamond 1503 87 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
16793993 16793993 PRJNA1111146_P_NODE_422834_length_178_cov_0.896000_g421696_i0 PRJNA1111146 422834 178 0.896 1.59488 Trebouxia sp. SL0000003 3350044 Plants Plants 248 1.7899999999999997e-61   NTclustered gi|2917929693|emb|OZ234920.1| 3350044 g421696 i0 92.045 0.98876404494382 176 14 99 0 3 178 1443990 1443815 Trebouxia sp. SL0000003 genome assembly, chromosome: 15 blastn 176 248 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
22698417 22698417 PRJNA1111146_P_NODE_161758_length_216_cov_2.975460_g160620_i0 PRJNA1111146 161758 216 2.97546 6.4269936 Chlorophyta 3041 Plants Plants 390 3.559999999999999e-104   NTclustered gi|1523765370|gb|MK231279.1| 29647 g160620 i0 99.533 99.0231481481482 214 1 99 0 3 216 825 612 Stichococcus sp. strain KZ-5-1-1 small subunit ribosomal RNA gene, partial sequence blastn 21389 390 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus sp.
23169401 23169401 PRJNA1111146_P_NODE_66539_length_268_cov_1.651163_g65401_i0 PRJNA1111146 66539 268 1.651163 4.42511684 Trebouxia aggregata 160068 Plants Plants 479 9.499999999999996e-131   NTclustered gi|162134340|gb|EU123979.1| 160068 g65401 i0 98.885 126.667910447761 269 2 100 1 1 268 2312 2044 Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast blastn 33947 479 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
23974467 23974467 PRJNA1111146_P_NODE_444879_length_172_cov_2.369748_g443741_i0 PRJNA1111146 444879 172 2.369748 4.07596656 Trebouxia 13786 Plants Plants 313 5.989999999999998e-81   NTclustered gi|1273623725|gb|KY033354.1| 285713 g443741 i0 100 24.5639534883721 169 0 98 0 1 169 8505 8673 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 4225 315 0.993650793650794 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
24442492 24442492 PRJNA1111146_P_NODE_352720_length_182_cov_0.883721_g351582_i0 PRJNA1111146 352720 182 0.883721 1.60837222 Chlamydomonas sp. KGE21 1220820 Plants Plants 322 1.07e-83   NTclustered gi|408440877|emb|HE974909.1| 1220820 g351582 i0 98.895 82.0769230769231 181 1 99 1 3 182 512 332 Chlamydomonas sp. KGE21 partial 28S rRNA gene, strain KGE21 blastn 14938 322 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. KGE21
24443038 24443038 PRJNA1111146_P_NODE_59540_length_276_cov_1.170404_g58403_i0 PRJNA1111146 59540 276 1.170404 3.23031504 Monoraphidium pusillum 307512 Plants Plants 510 3.48e-140   NTclustered gi|2720437858|gb|PP711304.1| 307512 g58403 i0 100 100.300724637681 276 0 100 0 1 276 3028 2753 Monoraphidium pusillum strain Ga024 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 27683 510 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium pusillum
27636620 27636620 PRJNA1111146_P_NODE_315284_length_185_cov_0.863636_g314146_i0 PRJNA1111146 315284 185 0.863636 1.5977266 Monoraphidium neglectum 145388 Plants Plants 51.6 2.29e-6   NR XP_013895809.1 145388 g314146 i0 63.9 0.583783783783784 36 13 58.4 0 108 1 1 36 XP_013895809.1 hypothetical protein MNEG_11174 [Monoraphidium neglectum] diamond 108 51.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
27699955 27699955 PRJNA1111146_P_NODE_251624_length_196_cov_1.328671_g250486_i0 PRJNA1111146 251624 196 1.328671 2.60419516 Trebouxia sp. A1-2 2608996 Plants Plants 70.9 2.35e-12   NR KAA6420936.1 2608996 g250486 i0 89.2 0.566326530612245 37 4 56.6 0 84 194 1 37 KAA6420936.1 MAG: hypothetical protein FRX49_09077 [Trebouxia sp. A1-2] diamond 111 70.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2
27920576 27920576 PRJNA1111146_P_NODE_341485_length_183_cov_0.869231_g340347_i0 PRJNA1111146 341485 183 0.869231 1.59069273 Micractinium conductrix 554055 Plants Plants 57.4 1.18e-7   NR PSC74993.1 554055 g340347 i0 90 0.491803278688525 30 3 49.2 0 165 76 863 892 PSC74993.1 ankyrin repeat [Micractinium conductrix] diamond 90 57.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium conductrix
28962815 28962815 PRJNA1111146_P_NODE_357188_length_182_cov_0.875969_g356050_i0 PRJNA1111146 357188 182 0.875969 1.59426358 Micractinium tetrahymenae 2728915 Plants Plants 70.5 2.7e-12   NR KAL4422479.1 2728915 g356050 i0 84.8 0.543956043956044 33 5 54.4 0 99 1 280 312 KAL4422479.1 hypothetical protein ABPG75_008676 [Micractinium tetrahymenae] diamond 99 70.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium tetrahymenae
29679692 29679692 PRJNA1111146_P_NODE_358910_length_182_cov_0.868217_g357772_i0 PRJNA1111146 358910 182 0.868217 1.58015494 Trebouxiophyceae 75966 Plants Plants 43.9 0.00597   NR PRW56719.1 3076 g357772 i0 43.5 1.45054945054945 46 26 75.8 0 42 179 177 222 PRW56719.1 SOUL heme-binding [Chlorella sorokiniana] diamond 264 43.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
31490134 31490134 PRJNA1111146_P_NODE_218296_length_203_cov_0.986667_g217158_i0 PRJNA1111146 218296 203 0.986667 2.00293401 Chlorella sorokiniana 3076 Plants Plants 68.6 1.76e-11   NR PRW58082.1 3076 g217158 i0 53 2.76354679802956 66 27 97.5 2 203 6 1409 1470 PRW58082.1 strawberry notch-like protein 1-like [Chlorella sorokiniana] diamond 561 68.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
31584954 31584954 PRJNA1111146_P_NODE_108656_length_239_cov_1.204301_g107518_i0 PRJNA1111146 108656 239 1.204301 2.87827939 Tetradesmus obliquus 3088 Plants Plants 57 3.12e-7   NR WIA23049.1 3088 g107518 i0 48.6 0.928870292887029 74 37 91.6 1 236 18 137 210 WIA23049.1 hypothetical protein OEZ85_001398 [Tetradesmus obliquus] diamond 222 57 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
32659792 32659792 PRJNA1111146_P_NODE_347940_length_182_cov_1.410853_g346802_i0 PRJNA1111146 347940 182 1.410853 2.56775246 Micractinium conductrix 554055 Plants Plants 45.1 0.00126   NR PSC75108.1 554055 g346802 i0 81 0.346153846153846 21 4 34.6 0 91 29 133 153 PSC75108.1 hypothetical protein C2E20_1860 [Micractinium conductrix] diamond 63 45.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium conductrix

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;