RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1111146" and tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 2 ✖

bioproject 1

  • PRJNA1111146 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4850018 4850018 PRJNA1111146_P_NODE_373624_length_181_cov_0.875000_g372486_i0 PRJNA1111146 373624 181 0.875 1.58375 Candidatus Blochmanniella 203804 Bacteria Bacteria 152 1.47e-32   NTclustered gi|485099197|ref|NR_102590.1| 251542 g372486 i0 82.558 356.662983425414 172 30 95 0 3 174 2787 2958 Candidatus Blochmannia chromaiodes strain 640 23S ribosomal RNA gene, complete sequence blastn 64556 152 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Blochmanniella Candidatus Blochmanniella chromaiodes
14244472 14244472 PRJNA1111146_P_NODE_126132_length_231_cov_0.898876_g124994_i0 PRJNA1111146 126132 231 0.898876 2.07640356 Candidatus Stammera capleta 2608262 Bacteria Bacteria 54.7 0.006   NTclustered gi|2676815364|gb|CP144825.1| 2608262 g124994 i0 96.875 0.138528138528139 32 1 14 0 14 45 267157 267126 MAG: Candidatus Stammera capleta isolate NMKNNIEB chromosome blastn 32 54.7 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;