RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1111146", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA1111146 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
216332 216332 PRJNA1111146_P_NODE_321361_length_184_cov_1.290076_g320223_i0 PRJNA1111146 321361 184 1.290076 2.37373984 Himasthla elongata 1175217 Platyhelminthes Platyhelminthes 340 2.99e-89   NTclustered gi|2753835719|gb|PP989105.1| 1175217 g320223 i0 100 99.7880434782609 184 0 100 0 1 184 89 272 Himasthla elongata isolate NOI-T3-2 small subunit ribosomal RNA gene, partial sequence blastn 18361 340 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Himasthlidae Himasthla Himasthla elongata
2767746 2767746 PRJNA1111146_P_NODE_71843_length_263_cov_1.757143_g70705_i0 PRJNA1111146 71843 263 1.757143 4.62128609 Echinoparyphium aconiatum 220808 Platyhelminthes Platyhelminthes 302 2.16e-77   NTclustered gi|2328359677|ref|NC_067751.1| 220808 g70705 i0 87.692 83.106463878327 260 31 98 1 4 262 9311 9570 Echinoparyphium aconiatum mitochondrion, complete genome blastn 21857 302 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Echinostomatidae Echinoparyphium Echinoparyphium aconiatum
11695506 11695506 PRJNA1111146_P_NODE_399870_length_179_cov_0.904762_g398732_i0 PRJNA1111146 399870 179 0.904762 1.61952398 Echinostoma hortense 48216 Platyhelminthes Platyhelminthes 52.8 0.015   NTclustered gi|1725994689|gb|KR062182.2| 48216 g398732 i0 96.774 0.173184357541899 31 1 17 0 143 173 8593 8563 Echinostoma hortense mitochondrion, complete genome blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Echinostomatidae Echinostoma Echinostoma hortense
31742836 31742836 PRJNA1111146_P_NODE_73817_length_262_cov_0.765550_g72679_i0 PRJNA1111146 73817 262 0.76555 2.005741 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 152 1.78e-41   NR AAX28387.3 6182 g72679 i0 95.3 13.7519083969466 86 4 98.5 0 260 3 350 435 AAX28387.3 SJCHGC01615 protein, partial [Schistosoma japonicum] diamond 3603 152 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;