RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1111146", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1111146 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23168930 23168930 PRJNA1111146_P_NODE_367879_length_181_cov_0.890625_g366741_i0 PRJNA1111146 367879 181 0.890625 1.61203125 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 117 5.38e-22   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g366741 i0 92.593 2.1767955801105 81 6 45 0 1 81 3594416 3594336 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 394 117 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
28520655 28520655 PRJNA1111146_P_NODE_400387_length_179_cov_0.904762_g399249_i0 PRJNA1111146 400387 179 0.904762 1.61952398 Rhodothermales bacterium 2306054 Bacteria Bacteria 57.4 3.58e-8   NR MBE2185579.1 2306054 g399249 i0 64.4 0.754189944134078 45 16 75.4 0 41 175 16 60 MBE2185579.1 histidine phosphatase family protein [Rhodothermales bacterium] diamond 135 57.4 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
28646964 28646964 PRJNA1111146_P_NODE_313847_length_185_cov_0.863636_g312709_i0 PRJNA1111146 313847 185 0.863636 1.5977266 Rhodothermales bacterium 2306054 Bacteria Bacteria 86.3 3.5e-19   NR MBE2185822.1 2306054 g312709 i0 65.6 0.989189189189189 61 21 98.9 0 183 1 115 175 MBE2185822.1 SPOR domain-containing protein [Rhodothermales bacterium] diamond 183 86.3 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;