RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1111146", tax_clade = "FCB group" and tax_phylum = "Candidatus Cloacimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Cloacimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1111146 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26869422 26869422 PRJNA1111146_P_NODE_73561_length_262_cov_1.086124_g72423_i0 PRJNA1111146 73561 262 1.086124 2.84564488 Pseudomonadati 3379134 Bacteria Bacteria 76.6 5.76e-14   NR OQY27256.1 1971726 g72423 i0 58.4 6.19465648854962 77 31 88.2 1 11 241 1112 1187 OQY27256.1 MAG: hypothetical protein B6244_11165 [Candidatus Cloacimonetes bacterium 4572_55] diamond 1623 76.6 1 Bacteria FCB group Pseudomonadati Candidatus Cloacimonadota         Candidatus Cloacimonetes bacterium 4572_55
29995997 29995997 PRJNA1111146_P_NODE_135391_length_227_cov_0.954023_g134253_i0 PRJNA1111146 135391 227 0.954023 2.16563221 Bacteria 2 Bacteria Bacteria 51.6 2.12e-5   NR MCB5279685.1 2030808 g134253 i0 41 2.06167400881057 78 40 99.1 3 2 226 33 107 MCB5279685.1 hypothetical protein [Candidatus Cloacimonadota bacterium] diamond 468 51.6 1 Bacteria FCB group Pseudomonadati Candidatus Cloacimonadota         Candidatus Cloacimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;