RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1111146", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA1111146 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2767141 2767141 PRJNA1111146_P_NODE_343803_length_183_cov_0.861538_g342665_i0 PRJNA1111146 343803 183 0.861538 1.57661454 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 316 5.009999999999999e-82   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g342665 i0 97.814 1 183 4 100 0 1 183 136143 135961 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 183 316 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
28985673 28985673 PRJNA1111146_P_NODE_385928_length_180_cov_0.889764_g384790_i0 PRJNA1111146 385928 180 0.889764 1.6015752 Bacteria 2 Bacteria Bacteria 64.3 7.93e-11   NR MBF0981760.1 2044595 g384790 i0 76.3 1.26666666666667 38 9 63.3 0 175 62 62 99 MBF0981760.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 228 64.3 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;