RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1111082" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1111082 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20616547 20616547 PRJNA1111082_P_NODE_5217_length_345_cov_3.459559_g5172_i0 PRJNA1111082 5217 345 3.459559 11.93547855 uncultured Chytridiomycota 175247 Fungi Fungi 78.7 5.39e-10   NTclustered gi|262235206|gb|GQ995417.1| 175247 g5172 i0 81.633 18.1014492753623 98 15 28 3 230 326 830 925 Uncultured Chytridiomycota clone T1P1AeC08 18S ribosomal RNA gene, partial sequence blastn 6245 78.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota         uncultured Chytridiomycota
30478619 30478619 PRJNA1111082_P_NODE_2153_length_504_cov_6.313225_g2108_i0 PRJNA1111082 2153 504 6.313225 31.818654 Phlyctochytrium bullatum 1352834 Fungi Fungi 48.1 4.96e-4   NR KAJ3118353.1 1352834 g2108 i0 36.8 0.404761904761905 68 38 40.5 2 461 258 10 72 KAJ3118353.1 hypothetical protein HDU96_002195 [Phlyctochytrium bullatum] diamond 204 48.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium bullatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;