RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1111082" and tax_phylum = "Candidatus Berkelbacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Berkelbacteria · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1111082 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29869492 29869492 PRJNA1111082_P_NODE_10171_length_255_cov_1.285714_g10126_i0 PRJNA1111082 10171 255 1.285714 3.2785707 root 1 Root_unresolved Root_unresolved 89.4 2.14e-19   NR MCR4307475.1 2053521 g10126 i0 54.1 4.96470588235294 85 36 98.8 2 253 2 135 217 MCR4307475.1 hypothetical protein [Candidatus Berkelbacteria bacterium] diamond 1266 89.4 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium
30321092 30321092 PRJNA1111082_P_NODE_11592_length_247_cov_0.896552_g11547_i0 PRJNA1111082 11592 247 0.896552 2.21448344 Candidatus Berkelbacteria bacterium 2053521 Bacteria Bacteria 61.2 6.92e-9   NR MCR4308201.1 2053521 g11547 i0 42.9 0.935222672064777 77 44 93.5 0 235 5 130 206 MCR4308201.1 hypothetical protein [Candidatus Berkelbacteria bacterium] diamond 231 61.2 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;