RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1111082", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA1111082 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31300092 31300092 PRJNA1111082_P_NODE_7855_length_289_cov_0.976852_g7810_i0 PRJNA1111082 7855 289 0.976852 2.82310228 Desulfurellales bacterium 2482794 Bacteria Bacteria 78.6 1.57e-14   NR TXH46562.1 2482794 g7810 i0 47.2 0.923875432525952 89 47 92.4 0 288 22 381 469 TXH46562.1 MAG: hypothetical protein E6Q97_29290 [Desulfurellales bacterium] diamond 267 78.6 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
32122746 32122746 PRJNA1111082_P_NODE_10698_length_251_cov_1.752809_g10653_i0 PRJNA1111082 10698 251 1.752809 4.39955059 Desulfurellales bacterium 2482794 Bacteria Bacteria 130 2.4e-36   NR TXH40796.1 2482794 g10653 i0 73.5 0.99203187250996006 83 22 99.2 0 3 251 19 101 TXH40796.1 MAG: hypothetical protein E6Q97_38935, partial [Desulfurellales bacterium] diamond 249 130 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
32470829 32470829 PRJNA1111082_P_NODE_9379_length_265_cov_2.281250_g9334_i0 PRJNA1111082 9379 265 2.28125 6.0453125 Desulfurellales bacterium 2482794 Bacteria Bacteria 91.3 3.19e-19   NR TXH43078.1 2482794 g9334 i0 55.8 1.94716981132075 86 37 97.4 1 260 3 279 363 TXH43078.1 MAG: hypothetical protein E6Q97_34675 [Desulfurellales bacterium] diamond 516 91.3 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
32597151 32597151 PRJNA1111082_P_NODE_9860_length_259_cov_1.408602_g9815_i0 PRJNA1111082 9860 259 1.408602 3.64827918 Campylobacterota bacterium 2026809 Bacteria Bacteria 124 1.92e-33   NR MDQ1338721.1 2026809 g9815 i0 67.9 0.972972972972973 84 25 97.3 1 8 259 36 117 MDQ1338721.1 hypothetical protein [Campylobacterota bacterium] diamond 252 124 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;