RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where bioproject = "PRJNA1111082", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 15 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 15 ✖

bioproject 1

  • PRJNA1111082 · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2296703 2296703 PRJNA1111082_P_NODE_11802_length_246_cov_0.901734_g11757_i0 PRJNA1111082 11802 246 0.901734 2.21826564 Gemmatimonadetes bacterium T265 2839016 Bacteria Bacteria 131 2.07e-33   NR GJG86145.1 2839016 g11757 i0 82.9 1 82 10 100 1 1 246 405 482 GJG86145.1 hypothetical protein tb265_13260 [Gemmatimonadetes bacterium T265] diamond 246 131 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium T265
2765911 2765911 PRJNA1111082_P_NODE_11103_length_249_cov_1.625000_g11058_i0 PRJNA1111082 11103 249 1.625 4.04625 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 263 9.56e-66   NTclustered gi|575456455|gb|CP007128.1| 861299 g11058 i0 85.83 76.6947791164659 247 35 99 0 3 249 4458012 4458258 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 19097 263 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
4042058 4042058 PRJNA1111082_P_NODE_12044_length_245_cov_0.906977_g11999_i0 PRJNA1111082 12044 245 0.906977 2.22209365 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 261 3.38e-65   NTclustered gi|2874253789|emb|OY969773.1| 412054 g11999 i0 87.179 1.9469387755102 234 24 95 5 12 243 98961 98732 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 477 261 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
7868012 7868012 PRJNA1111082_P_NODE_12427_length_243_cov_0.917647_g12382_i0 PRJNA1111082 12427 243 0.917647 2.22988221 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 202 2.0599999999999995e-47   NTclustered gi|2874253789|emb|OY969773.1| 412054 g12382 i0 82.7 0.975308641975309 237 32 98 7 3 239 1018823 1019050 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 237 202 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
9142885 9142885 PRJNA1111082_P_NODE_12028_length_245_cov_0.906977_g11983_i0 PRJNA1111082 12028 245 0.906977 2.22209365 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 252 2.0299999999999998e-62   NTclustered gi|575456455|gb|CP007128.1| 861299 g11983 i0 86.463 2.57142857142857 229 31 93 0 17 245 3862120 3861892 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 630 252 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
10418691 10418691 PRJNA1111082_P_NODE_11789_length_246_cov_0.901734_g11744_i0 PRJNA1111082 11789 246 0.901734 2.21826564 Gemmatimonadetes bacterium T265 2839016 Bacteria Bacteria 102 1.17e-24   NR GJG86185.1 2839016 g11744 i0 58.4 1.08536585365854 89 29 98.8 1 3 245 165 253 GJG86185.1 hypothetical protein tb265_13660 [Gemmatimonadetes bacterium T265] diamond 267 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium T265
14244092 14244092 PRJNA1111082_P_NODE_12232_length_244_cov_0.912281_g12187_i0 PRJNA1111082 12232 244 0.912281 2.22596564 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 200 7.4299999999999985e-47   NTclustered gi|2874253789|emb|OY969773.1| 412054 g12187 i0 91.667 0.590163934426229 144 12 59 0 1 144 865039 865182 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 144 200 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16792408 16792408 PRJNA1111082_P_NODE_12674_length_242_cov_0.923077_g12629_i0 PRJNA1111082 12674 242 0.923077 2.23384634 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 206 1.58e-48   NTclustered gi|2874253789|emb|OY969773.1| 412054 g12629 i0 88.068 1.33057851239669 176 18 71 3 5 177 1622167 1621992 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 322 206 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
19341102 19341102 PRJNA1111082_P_NODE_11036_length_250_cov_0.881356_g10991_i0 PRJNA1111082 11036 250 0.881356 2.20339 Gemmatirosa sp. 2510638 Bacteria Bacteria 60.1 3.14e-8   NR HEY0777960.1 2510638 g10991 i0 55.9 0.708 59 24 70.8 1 185 9 582 638 HEY0777960.1 RHS repeat-associated core domain-containing protein [Gemmatirosa sp.] diamond 177 60.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
19341139 19341139 PRJNA1111082_P_NODE_12696_length_242_cov_0.923077_g12651_i0 PRJNA1111082 12696 242 0.923077 2.23384634 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 82.4 2.78e-11   NTclustered gi|2874254107|emb|OY970192.1| 412054 g12651 i0 87.5 0.297520661157025 72 8 29 1 97 167 3775024 3775095 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 72 82.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
28015466 28015466 PRJNA1111082_P_NODE_12185_length_244_cov_0.912281_g12140_i0 PRJNA1111082 12185 244 0.912281 2.22596564 Gemmatimonadetes bacterium T265 2839016 Bacteria Bacteria 134 1.81e-36   NR GJG88674.1 2839016 g12140 i0 88.9 0.995901639344262 81 9 99.6 0 2 244 55 135 GJG88674.1 malonyl CoA-acyl carrier protein transacylase [Gemmatimonadetes bacterium T265] diamond 243 134 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium T265
28741537 28741537 PRJNA1111082_P_NODE_2067_length_512_cov_1.835991_g2022_i0 PRJNA1111082 2067 512 1.835991 9.40027392 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 53.1 1.23e-4   NR HJQ10304.1 2026741 g2022 i0 29.6 0.732421875 125 79 70.9 4 65 427 349 468 HJQ10304.1 Ig-like domain-containing protein [Gemmatimonadaceae bacterium] diamond 375 53.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30541685 30541685 PRJNA1111082_P_NODE_11613_length_247_cov_0.896552_g11568_i0 PRJNA1111082 11613 247 0.896552 2.21448344 Gemmatirosa sp. 2510638 Bacteria Bacteria 100 1.4100000000000001e-22   NR HZF67385.1 2510638 g11568 i0 65 0.97165991902834 80 28 97.2 0 4 243 206 285 HZF67385.1 iron ABC transporter permease [Gemmatirosa sp.] diamond 240 100 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
31490122 31490122 PRJNA1111082_P_NODE_12656_length_242_cov_0.923077_g12611_i0 PRJNA1111082 12656 242 0.923077 2.23384634 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 123 1e-34   NR MBP6572803.1 2448054 g12611 i0 91.9 0.768595041322314 62 5 76.9 0 240 55 31 92 MBP6572803.1 hypothetical protein [Gemmatimonadales bacterium] diamond 186 123 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32597145 32597145 PRJNA1111082_P_NODE_11540_length_247_cov_0.896552_g11495_i0 PRJNA1111082 11540 247 0.896552 2.21448344 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 69.7 1.95e-12   NR MBA2707649.1 2026741 g11495 i0 90.9 2.40485829959514 33 3 40.1 0 149 247 1 33 MBA2707649.1 DNA cytosine methyltransferase [Gemmatimonadaceae bacterium] diamond 594 69.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;