RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA1111082", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 8 ✖

tax_clade 1

  • Bacteria candidate phyla · 8 ✖

bioproject 1

  • PRJNA1111082 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27352494 27352494 PRJNA1111082_P_NODE_12743_length_240_cov_2.580838_g12698_i0 PRJNA1111082 12743 240 2.580838 6.1940112 Minisyncoccota bacterium 2053589 Bacteria Bacteria 77 2.96e-14   NR MFA6095649.1 2053589 g12698 i0 46.8 0.9625 77 40 95 1 238 11 198 274 MFA6095649.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 231 77 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28109927 28109927 PRJNA1111082_P_NODE_9225_length_268_cov_1.066667_g9180_i0 PRJNA1111082 9225 268 1.066667 2.85866756 Minisyncoccota bacterium 2053589 Bacteria Bacteria 153 2.7499999999999993e-43   NR HEY6020310.1 2053589 g9180 i0 78.7 0.996268656716418 89 19 99.6 0 268 2 213 301 HEY6020310.1 phage terminase large subunit [Candidatus Paceibacterota bacterium] diamond 267 153 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28394160 28394160 PRJNA1111082_P_NODE_9606_length_262_cov_2.063492_g9561_i0 PRJNA1111082 9606 262 2.063492 5.40634904 Minisyncoccota bacterium 2053589 Bacteria Bacteria 102 1.36e-25   NR HEY4515574.1 2053589 g9561 i0 64.7 0.973282442748092 85 30 97.3 0 3 257 33 117 HEY4515574.1 type II secretion system protein [Candidatus Paceibacterota bacterium] diamond 255 102 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28489015 28489015 PRJNA1111082_P_NODE_9207_length_268_cov_1.415385_g9162_i0 PRJNA1111082 9207 268 1.415385 3.7932318 Minisyncoccota bacterium 2053589 Bacteria Bacteria 150 2.76e-44   NR MBP9818958.1 2053589 g9162 i0 79.8 0.996268656716418 89 18 99.6 0 268 2 36 124 MBP9818958.1 IS200/IS605 family transposase [Candidatus Paceibacterota bacterium] diamond 267 150 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28638249 28638249 PRJNA1111082_P_NODE_1147_length_649_cov_1.631944_g1103_i0 PRJNA1111082 1147 649 1.631944 10.59131656 Pseudomonadati 3379134 Bacteria Bacteria 134 3.58e-36   NR MDD5152819.1 2053589 g1103 i0 49.3 2.03852080123267 140 68 63.3 1 448 38 15 154 MDD5152819.1 DUF4446 family protein [Candidatus Paceibacterota bacterium] diamond 1323 134 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28899217 28899217 PRJNA1111082_P_NODE_10068_length_256_cov_1.415301_g10023_i0 PRJNA1111082 10068 256 1.415301 3.62317056 Minisyncoccota bacterium 2053589 Bacteria Bacteria 109 1.0600000000000002e-27   NR MCF7865580.1 2053589 g10023 i0 82.5 2.21484375 63 11 73.8 0 67 255 16 78 MCF7865580.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 567 109 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
30036232 30036232 PRJNA1111082_P_NODE_6431_length_316_cov_1.086420_g6386_i0 PRJNA1111082 6431 316 1.08642 3.4330872 Minisyncoccota bacterium 2053589 Bacteria Bacteria 45.8 0.00674   NR MDD3048279.1 2053589 g6386 i0 48.8 0.408227848101266 43 22 40.8 0 220 92 83 125 MDD3048279.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 129 45.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
30225714 30225714 PRJNA1111082_P_NODE_1912_length_531_cov_1.672489_g1867_i0 PRJNA1111082 1912 531 1.672489 8.88091659 Minisyncoccota bacterium 2053589 Bacteria Bacteria 197 2e-61   NR MDI9407801.1 2053589 g1867 i0 62.2 0.807909604519774 143 54 80.8 0 92 520 1 143 MDI9407801.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 429 197 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;