RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1111082", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA1111082 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28394152 28394152 PRJNA1111082_P_NODE_11826_length_246_cov_0.901734_g11781_i0 PRJNA1111082 11826 246 0.901734 2.21826564 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 114 8.44e-28   NR MCF7843864.1 2044595 g11781 i0 83.5 0.963414634146341 79 13 96.3 0 244 8 151 229 MCF7843864.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 237 114 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
32122748 32122748 PRJNA1111082_P_NODE_11558_length_247_cov_0.896552_g11513_i0 PRJNA1111082 11558 247 0.896552 2.21448344 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 159 1.04e-43   NR MBP7806059.1 2044595 g11513 i0 95.1 0.995951417004049 82 4 99.6 0 246 1 471 552 MBP7806059.1 translation elongation factor 4 [Candidatus Altimarinota bacterium] diamond 246 159 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;