RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1111077" and tax_phylum = "Cercozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1111077 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10418126 10418126 PRJNA1111077_P_NODE_23849_length_274_cov_1.437811_g23628_i0 PRJNA1111077 23849 274 1.437811 3.93960214 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 507 4.47e-139   NTclustered gi|238617602|gb|FJ973377.1| 188950 g23628 i0 100 100.35401459854 274 0 100 0 1 274 308 35 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 27497 507 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
16791600 16791600 PRJNA1111077_P_NODE_14974_length_310_cov_4.092827_g14753_i0 PRJNA1111077 14974 310 4.092827 12.6877637 Cercozoa sp. YPF501 552662 SAR_Eukaryotes SAR_Eukaryotes 178 4.58e-40   NTclustered gi|220983376|dbj|AB453012.1| 552662 g14753 i0 96.296 37.7225806451613 108 4 35 0 203 310 1686 1579 Cercozoa sp. YPF501 gene for nuclear large subunit ribosomal RNA, partial sequence blastn 11694 178 1 Eukaryota Sar   Cercozoa         Cercozoa sp. YPF501
18066059 18066059 PRJNA1111077_P_NODE_11955_length_343_cov_1.485185_g11734_i0 PRJNA1111077 11955 343 1.485185 5.09418455 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 628 1.1799999999999997e-175   NTclustered gi|238617602|gb|FJ973377.1| 188950 g11734 i0 99.708 94.0758017492711 343 1 100 0 1 343 1790 2132 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 32268 628 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
18872784 18872784 PRJNA1111077_P_NODE_455_length_1280_cov_3.318144_g341_i0 PRJNA1111077 455 1280 3.318144 42.4722432 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 481 5.659999999999998e-165   NR MES1909605.1 1215613 g341 i0 72.8 3.0375 313 85 73.4 0 1269 331 121 433 MES1909605.1 hypothetical protein [Cercozoa sp. M6MM] diamond 3888 484 0.993801652892562 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
24440322 24440322 PRJNA1111077_P_NODE_12780_length_332_cov_1.146718_g12559_i0 PRJNA1111077 12780 332 1.146718 3.80710376 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 508 1.54e-139   NTclustered gi|238617630|gb|FJ973394.1| 188950 g12559 i0 98.276 96.7228915662651 290 5 87 0 42 331 1 290 Bodomorpha minima strain ATCC 50339 actin (act) gene, partial cds blastn 32112 508 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;