RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1111077" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1111077 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7867102 7867102 PRJNA1111077_P_NODE_10867_length_359_cov_1.076923_g10646_i0 PRJNA1111077 10867 359 1.076923 3.86615357 Cryptosporidium sp. horse genotype 564992 SAR_Eukaryotes SAR_Eukaryotes 379 1.37e-100   NTclustered gi|2274500370|gb|ON419491.1| 564992 g10646 i0 85.912 100.392757660167 362 43 99 7 2 359 425 68 Cryptosporidium sp. horse genotype isolate HN16 actin gene, partial cds blastn 36041 379 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium sp. horse genotype
9142146 9142146 PRJNA1111077_P_NODE_17728_length_296_cov_5.354260_g17507_i0 PRJNA1111077 17728 296 5.35426 15.8486096 Cryptosporidium bovis 310047 SAR_Eukaryotes SAR_Eukaryotes 130 1.23e-25   NTclustered gi|2787671673|ref|XM_067327630.1| 310047 g17507 i0 83.099 23.1216216216216 142 24 48 0 11 152 324 183 Cryptosporidium bovis ribosomal S23 (FG379_002027), partial mRNA blastn 6844 130 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium bovis
10418345 10418345 PRJNA1111077_P_NODE_32709_length_247_cov_1.304598_g32488_i0 PRJNA1111077 32709 247 1.304598 3.22235706 Toxoplasma gondii 5811 SAR_Eukaryotes SAR_Eukaryotes 163 9.88e-36   NTclustered gi|1084978131|ref|XM_002366722.2| 508771 g32488 i0 81.818 57.1781376518219 198 32 79 4 52 247 248 443 Toxoplasma gondii ME49 ribosomal protein RPS5 (RPS5), mRNA blastn 14123 163 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
11224504 11224504 PRJNA1111077_P_NODE_25189_length_269_cov_1.882653_g24968_i0 PRJNA1111077 25189 269 1.882653 5.06433657 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 128 1.27e-34   NR EAA19392.1 73239 g24968 i0 70.5 5.88847583643123 88 26 98.1 0 4 267 10 97 EAA19392.1 ribosomal protein L22 [Plasmodium yoelii yoelii] diamond 1584 128 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
14243751 14243751 PRJNA1111077_P_NODE_33832_length_245_cov_2.534884_g33611_i0 PRJNA1111077 33832 245 2.534884 6.2104658 Plasmodium yoelii 5861 SAR_Eukaryotes SAR_Eukaryotes 172 1.63e-38   NTclustered gi|30314956|gb|AF494194.1| 5861 g33611 i0 80.531 9.17551020408163 226 42 92 2 19 243 260 36 Plasmodium yoelii calreticulin-like protein mRNA, partial cds blastn 2248 172 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
24440538 24440538 PRJNA1111077_P_NODE_21660_length_281_cov_2.427885_g21439_i0 PRJNA1111077 21660 281 2.427885 6.82235685 Eimeria acervulina 5801 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.026   NTclustered gi|914996626|ref|XM_013391562.1| 5801 g21439 i0 100 0.099644128113879 28 0 10 0 229 256 596 569 Eimeria acervulina hypothetical protein, conserved partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina
29143536 29143536 PRJNA1111077_P_NODE_18989_length_290_cov_1.419355_g18768_i0 PRJNA1111077 18989 290 1.419355 4.1161295 Cryptosporidium 5806 SAR_Eukaryotes SAR_Eukaryotes 70.9 3.4e-12   NR XP_625504.1 353152 g18768 i0 60 1.13793103448276 55 22 56.9 0 258 94 204 258 XP_625504.1 60S ribosomal protein L7A, partial [Cryptosporidium parvum Iowa II] diamond 330 71.6 0.990223463687151 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;