RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where bioproject = "PRJNA1111077", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 16 ✖

tax_kingdom 1

  • Fungi · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA1111077 · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1021058 1021058 PRJNA1111077_P_NODE_29321_length_253_cov_3.744444_g29100_i0 PRJNA1111077 29321 253 3.744444 9.47344332 Spizellomyces 4815 Fungi Fungi 363 9.339999999999996e-96   NTclustered gi|268636534|gb|FJ827676.1| 117818 g29100 i0 92.52 100.517786561265 254 18 100 1 1 253 27 280 Spizellomyces dolichospermus voucher DAOM BR 346 28S ribosomal RNA gene, partial sequence blastn 25431 363 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces dolichospermus
5317718 5317718 PRJNA1111077_P_NODE_30045_length_251_cov_1.353933_g29824_i0 PRJNA1111077 30045 251 1.353933 3.39837183 Chytridiales sp. JEL 2011832 Fungi Fungi 112 3.2900000000000004e-27   NR KAJ3411547.1 2786947 g29824 i0 65.4 3.76494023904382 81 28 96.8 0 247 5 121 201 KAJ3411547.1 Elongation factor 1-gamma [Chytridiales sp. JEL 0842] diamond 945 112 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales     Chytridiales sp. JEL 0842
14243306 14243306 PRJNA1111077_P_NODE_1592_length_814_cov_2.522267_g1400_i0 PRJNA1111077 1592 814 2.522267 20.53125338 Globomyces pollinis-pini 382532 Fungi Fungi 302 1.25e-93   NR KAI8893489.1 382532 g1400 i0 57.4 2.00491400491401 272 115 99.9 1 813 1 275 546 KAI8893489.1 P-loop containing nucleoside triphosphate hydrolase protein [Globomyces pollinis-pini] diamond 1632 302 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Globomycetaceae Globomyces Globomyces pollinis-pini
15517140 15517140 PRJNA1111077_P_NODE_18513_length_292_cov_2.063927_g18292_i0 PRJNA1111077 18513 292 2.063927 6.02666684 root 1 Root_unresolved Root_unresolved 111 4.21e-26   NR KAJ3199631.1 109932 g18292 i0 52 2.96917808219178 98 45 99.7 2 2 292 571 667 KAJ3199631.1 hypothetical protein HDU82_000280 [Entophlyctis luteolus] diamond 867 111 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Entophlyctis Entophlyctis luteolus
15517732 15517732 PRJNA1111077_P_NODE_7793_length_417_cov_2.133721_g7572_i0 PRJNA1111077 7793 417 2.133721 8.89761657 Piromyces sp. 45796 Fungi Fungi 556 6.97e-154   NTclustered gi|1388116266|gb|MH043820.1| 45796 g7572 i0 100 86.9136690647482 301 0 72 0 1 301 282 582 Piromyces sp. strain B5 Glycosyl hydrolase family 43 mRNA, partial cds blastn 36243 556 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp.
18066707 18066707 PRJNA1111077_P_NODE_4815_length_519_cov_2.405830_g4594_i0 PRJNA1111077 4815 519 2.40583 12.4862577 Globomyces pollinis-pini 382532 Fungi Fungi 163 3.02e-43   NR KAI8893489.1 382532 g4594 i0 44.1 1.21965317919075 211 78 98.8 2 5 517 54 264 KAI8893489.1 P-loop containing nucleoside triphosphate hydrolase protein [Globomyces pollinis-pini] diamond 633 163 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Globomycetaceae Globomyces Globomyces pollinis-pini
26592705 26592705 PRJNA1111077_P_NODE_17101_length_301_cov_1.482456_g16880_i0 PRJNA1111077 17101 301 1.482456 4.46219256 Rhizoclosmatium globosum 329046 Fungi Fungi 48.1 8.38e-4   NR ORY50952.1 329046 g16880 i0 42 0.807308970099668 81 39 75.7 2 46 273 197 274 ORY50952.1 hypothetical protein BCR33DRAFT_498941 [Rhizoclosmatium globosum] diamond 243 48.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Rhizoclosmatium Rhizoclosmatium globosum
27825990 27825990 PRJNA1111077_P_NODE_36644_length_241_cov_0.916667_g36423_i0 PRJNA1111077 36644 241 0.916667 2.20916747 Cladochytrium replicatum 109936 Fungi Fungi 46.2 3.38e-4   NR KAI8803494.1 109936 g36423 i0 88.9 0.672199170124481 27 3 33.6 0 240 160 65 91 KAI8803494.1 ribosomal protein L37ae [Cladochytrium replicatum] diamond 162 46.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Cladochytriaceae Cladochytrium Cladochytrium replicatum
28046860 28046860 PRJNA1111077_P_NODE_14765_length_310_cov_5.139241_g14544_i0 PRJNA1111077 14765 310 5.139241 15.9316471 Spizellomyces sp. 'palustris' 117820 Fungi Fungi 68.6 7.06e-11   NR TPX70379.1 117820 g14544 i0 36.5 6.08709677419355 126 55 98.7 2 308 3 786 910 TPX70379.1 hypothetical protein SpCBS45565_g01800 [Spizellomyces sp. 'palustris'] diamond 1887 68.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces sp. 'palustris'
28101173 28101173 PRJNA1111077_P_NODE_28245_length_258_cov_1.394595_g28024_i0 PRJNA1111077 28245 258 1.394595 3.5980551 Chytridiomycota 4761 Fungi Fungi 45.8 0.00373   NR ORY47303.1 329046 g28024 i0 40.4 1.34883720930233 57 34 66.3 0 79 249 463 519 ORY47303.1 PRMT5-domain-containing protein [Rhizoclosmatium globosum] diamond 348 45.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Rhizoclosmatium Rhizoclosmatium globosum
28109904 28109904 PRJNA1111077_P_NODE_26345_length_265_cov_1.578125_g26124_i0 PRJNA1111077 26345 265 1.578125 4.18203125 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 92 2.32e-19   NR KAH9260395.1 1357716 g26124 i0 53.6 0.950943396226415 84 36 91.7 1 2 244 55 138 KAH9260395.1 hypothetical protein BASA81_001565 [Batrachochytrium salamandrivorans] diamond 252 92 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
30943843 30943843 PRJNA1111077_P_NODE_37274_length_236_cov_3.417178_g37053_i0 PRJNA1111077 37274 236 3.417178 8.06454008 Chytridiomycota 4761 Fungi Fungi 116 1.08e-28   NR KAI8807887.1 109936 g37053 i0 64.1 2.97457627118644 78 28 99.2 0 2 235 305 382 KAI8807887.1 hypothetical protein BJ742DRAFT_811130 [Cladochytrium replicatum] diamond 702 117 0.991452991452991 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Cladochytriaceae Cladochytrium Cladochytrium replicatum
30952614 30952614 PRJNA1111077_P_NODE_12974_length_329_cov_2.730469_g12753_i0 PRJNA1111077 12974 329 2.730469 8.98324301 Chytriomyces hyalinus 4814 Fungi Fungi 146 9.27e-43   NR KAJ3221447.1 4814 g12753 i0 63 5.89969604863222 108 40 98.5 0 324 1 1 108 KAJ3221447.1 profilin, required for normal timing of actin polymerization in response to thermal stress [Chytriomyces hyalinus] diamond 1941 146 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Chytriomyces Chytriomyces hyalinus
31426574 31426574 PRJNA1111077_P_NODE_30616_length_250_cov_1.740113_g30395_i0 PRJNA1111077 30616 250 1.740113 4.3502825 Entophlyctis luteolus 109932 Fungi Fungi 87.4 1.91e-18   NR KAJ3204768.1 109932 g30395 i0 56.5 6.624 69 30 82.8 0 40 246 5 73 KAJ3204768.1 ribosomal protein P0 (A0) (L10E) [Entophlyctis luteolus] diamond 1656 87.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Entophlyctis Entophlyctis luteolus
31553366 31553366 PRJNA1111077_P_NODE_20156_length_286_cov_1.929577_g19935_i0 PRJNA1111077 20156 286 1.929577 5.51859022 Borealophlyctis nickersoniae 2735257 Fungi Fungi 70.9 3.55e-12   NR KAJ3291912.1 2735257 g19935 i0 46 1.88811188811189 87 46 91.3 1 18 278 123 208 KAJ3291912.1 hypothetical protein HK104_005716 [Borealophlyctis nickersoniae] diamond 540 70.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Borealophlyctidaceae Borealophlyctis Borealophlyctis nickersoniae
32027679 32027679 PRJNA1111077_P_NODE_21878_length_281_cov_0.985577_g21657_i0 PRJNA1111077 21878 281 0.985577 2.76947137 Nowakowskiella sp. JEL 2012159 Fungi Fungi 48.5 3.35e-4   NR KAJ3121442.1 2732418 g21657 i0 40 0.854092526690391 80 32 85.4 3 41 280 111 174 KAJ3121442.1 hypothetical protein HK098_003670 [Nowakowskiella sp. JEL0407] diamond 240 48.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella sp. JEL0407

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;