RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1111077", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA1111077 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4041710 4041710 PRJNA1111077_P_NODE_32984_length_247_cov_0.885057_g32763_i0 PRJNA1111077 32984 247 0.885057 2.18609079 Mycoplasmopsis cynos 171284 Bacteria Bacteria 440 4.079999999999999e-119   NTclustered gi|2691949773|gb|CP140753.1| 171284 g32763 i0 98.785 25.9878542510121 247 3 100 0 1 247 972743 972497 Mycoplasmopsis cynos strain 87299 chromosome blastn 6419 440 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis cynos
14243557 14243557 PRJNA1111077_P_NODE_25672_length_267_cov_2.561856_g25451_i0 PRJNA1111077 25672 267 2.561856 6.84015552 Mycoplasma tullyi 1612150 Bacteria Bacteria 84.2 8.66e-12   NTclustered gi|1885695470|gb|CP059674.1| 1612150 g25451 i0 89.394 11.0299625468165 66 7 25 0 161 226 831430 831495 Mycoplasma tullyi strain 56A97T chromosome, complete genome blastn 2945 84.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma tullyi
27383938 27383938 PRJNA1111077_P_NODE_19343_length_289_cov_1.407407_g19122_i0 PRJNA1111077 19343 289 1.407407 4.06740623 Mycoplasmatota bacterium 2231116 Bacteria Bacteria 77.4 4.23e-14   NR MCI5967136.1 2231116 g19122 i0 53.9 0.923875432525952 89 40 91.3 1 1 264 143 231 MCI5967136.1 ferrous iron transport protein B [Mycoplasmatota bacterium] diamond 267 77.4 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;