RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1111077", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA1111077 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6592788 6592788 PRJNA1111077_P_NODE_24466_length_272_cov_1.206030_g24245_i0 PRJNA1111077 24466 272 1.20603 3.2804016 uncultured delta proteobacterium 34034 Bacteria Bacteria 217 8.359999999999999e-52   NTclustered gi|2874253674|emb|OY969108.1| 34034 g24245 i0 81.25 10.1654411764706 272 47 99 4 1 271 216172 215904 MAG: uncultured delta proteobacterium isolate MFD01828.bin.c.1 genome assembly, chromosome: 1 blastn 2765 217 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
27817340 27817340 PRJNA1111077_P_NODE_28324_length_257_cov_3.548913_g28103_i0 PRJNA1111077 28324 257 3.548913 9.12070641 Pseudomonadati 3379134 Bacteria Bacteria 150 2.4199999999999998e-42   NR OGQ18009.1 1797848 g28103 i0 83.3 3.92217898832685 84 14 98.1 0 255 4 133 216 OGQ18009.1 MAG: hypothetical protein A2138_21075 [Deltaproteobacteria bacterium RBG_16_71_12] diamond 1008 151 0.993377483443709 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_16_71_12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;