RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1111077", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1111077 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14243872 14243872 PRJNA1111077_P_NODE_4452_length_536_cov_1.911447_g4231_i0 PRJNA1111077 4452 536 1.911447 10.24535592 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 248 5.57e-80   NR CEP01968.1 37360 g4231 i0 70.3 2.9160447761194 175 50 97.9 1 526 2 1 173 CEP01968.1 hypothetical protein PBRA_002233 [Plasmodiophora brassicae] diamond 1563 248 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
16791857 16791857 PRJNA1111077_P_NODE_25094_length_269_cov_3.117347_g24873_i0 PRJNA1111077 25094 269 3.117347 8.38566343 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 151 9.34e-45   NR CEO97530.1 37360 g24873 i0 79.8 0.992565055762082 89 18 99.3 0 267 1 9 97 CEO97530.1 hypothetical protein PBRA_000875 [Plasmodiophora brassicae] diamond 267 151 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28867797 28867797 PRJNA1111077_P_NODE_30828_length_250_cov_0.870056_g30607_i0 PRJNA1111077 30828 250 0.870056 2.17514 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 54.3 6.76e-7   NR CEP03597.1 37360 g30607 i0 45.3 2.112 64 33 76.8 2 201 10 51 112 CEP03597.1 hypothetical protein PBRA_009482 [Plasmodiophora brassicae] diamond 528 54.3 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32461927 32461927 PRJNA1111077_P_NODE_16539_length_307_cov_1.602564_g16318_i0 PRJNA1111077 16539 307 1.602564 4.91987148 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 152 4.4199999999999986e-43   NR CEP01219.1 37360 g16318 i0 73.7 3.6742671009772 99 20 90.9 1 306 28 220 318 CEP01219.1 hypothetical protein PBRA_001825 [Plasmodiophora brassicae] diamond 1128 152 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;