RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA1111077", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 11 ✖

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJNA1111077 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1489274 1489274 PRJNA1111077_P_NODE_19802_length_287_cov_3.308411_g19581_i0 PRJNA1111077 19802 287 3.308411 9.49513957 Cochliopodium spiniferum 313558 Discosea other_Eukaryota 412 1.0599999999999996e-110   NTclustered gi|330902897|gb|JF298273.1| 313558 g19581 i0 92.657 95.4216027874565 286 21 99 0 2 287 259 544 Cochliopodium spiniferum clone 5102 actin gene, partial cds blastn 27386 412 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium spiniferum
2765541 2765541 PRJNA1111077_P_NODE_31303_length_249_cov_1.670455_g31082_i0 PRJNA1111077 31303 249 1.670455 4.15943295 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 102 1.48e-25   NR XP_004353558.1 1257118 g31082 i0 70 1.67469879518072 70 21 84.3 0 248 39 98 167 XP_004353558.1 uncharacterized protein ACA1_144210 [Acanthamoeba castellanii str. Neff] diamond 417 102 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4041451 4041451 PRJNA1111077_P_NODE_21124_length_283_cov_1.514286_g20903_i0 PRJNA1111077 21124 283 1.514286 4.28542938 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 496 1e-135   NTclustered gi|330902855|gb|JF298253.1| 1017091 g20903 i0 98.239 13.1095406360424 284 3 100 2 1 283 80 362 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 3710 496 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
7398995 7398995 PRJNA1111077_P_NODE_4346_length_542_cov_1.321962_g4125_i0 PRJNA1111077 4346 542 1.321962 7.16503404 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 641 2.49e-179   NTclustered gi|33946348|gb|AY294153.1| 197527 g4125 i0 88.007 99.4059040590406 542 65 100 0 1 542 376 917 Platyamoeba placida actin mRNA, partial cds blastn 53878 641 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
7867536 7867536 PRJNA1111077_P_NODE_28127_length_258_cov_2.102703_g27906_i0 PRJNA1111077 28127 258 2.102703 5.42497374 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 107 1.0799999999999999e-24   NR XP_004336225.1 1257118 g27906 i0 65.9 7.62790697674419 82 28 95.3 0 250 5 262 343 XP_004336225.1 gammaadaptin 1, putative [Acanthamoeba castellanii str. Neff] diamond 1968 107 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11693190 11693190 PRJNA1111077_P_NODE_18390_length_292_cov_5.013699_g18169_i0 PRJNA1111077 18390 292 5.013699 14.64000108 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 375 1.4099999999999998e-99   NTclustered gi|300078498|gb|GU001160.1| 5755 g18169 i0 89.375 14.1917808219178 320 5 100 13 1 292 6142 6460 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4144 375 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11693294 11693294 PRJNA1111077_P_NODE_22870_length_277_cov_2.215686_g22649_i0 PRJNA1111077 22870 277 2.215686 6.13745022 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 124 3.56e-31   NR XP_004334355.1 1257118 g22649 i0 56 1.9927797833935 91 40 98.6 0 276 4 315 405 XP_004334355.1 protein disulfideisomerase domain containing protein [Acanthamoeba castellanii str. Neff] diamond 552 124 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20615750 20615750 PRJNA1111077_P_NODE_20797_length_284_cov_1.706161_g20576_i0 PRJNA1111077 20797 284 1.706161 4.84549724 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 440 4.789999999999998e-119   NTclustered gi|300078498|gb|GU001160.1| 5755 g20576 i0 94.257 1.04225352112676 296 4 100 4 1 284 5925 5631 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 296 440 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27162375 27162375 PRJNA1111077_P_NODE_34242_length_245_cov_0.895349_g34021_i0 PRJNA1111077 34242 245 0.895349 2.19360505 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 89.7 1.58e-21   NR XP_004352995.1 1257118 g34021 i0 62.1 1.7265306122449 66 25 80.8 0 2 199 5 70 XP_004352995.1 uncharacterized protein ACA1_070880 [Acanthamoeba castellanii str. Neff] diamond 423 89.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27636591 27636591 PRJNA1111077_P_NODE_36244_length_242_cov_0.911243_g36023_i0 PRJNA1111077 36244 242 0.911243 2.20520806 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 72 1.79e-12   NR XP_004341420.1 1257118 g36023 i0 48.1 0.954545454545455 77 37 95.5 1 6 236 478 551 XP_004341420.1 vacuolar sorting protein, putative [Acanthamoeba castellanii str. Neff] diamond 231 72 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29878349 29878349 PRJNA1111077_P_NODE_25011_length_270_cov_1.375635_g24790_i0 PRJNA1111077 25011 270 1.375635 3.7142145 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 97.4 3.18e-21   NR XP_004339747.1 1257118 g24790 i0 52.7 1.01111111111111 91 42 100 1 270 1 923 1013 XP_004339747.1 leucine rich repeat domain containing protein [Acanthamoeba castellanii str. Neff] diamond 273 97.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;