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contig_metadata

34 rows where bioproject = "PRJNA1108487" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 34 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1108487 · 34 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1488130 1488130 PRJNA1108487_P_NODE_82_length_1715_cov_7.629720_g63_i0 PRJNA1108487 82 1715 7.62972 130.849698 Minicystis rosea 888845 Bacteria Bacteria 1812 0   NTclustered gi|1127353251|gb|CP016211.1| 888845 g63 i0 85.813 146.309620991254 1734 216 100 27 1 1715 770569 768847 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 250921 1812 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
5316305 5316305 PRJNA1108487_P_NODE_2445_length_433_cov_2.555556_g2379_i0 PRJNA1108487 2445 433 2.555556 11.06555748 Myxococcaceae bacterium 2484252 Bacteria Bacteria 265 1.48e-85   NR RYZ13579.1 2484252 g2379 i0 91.6 0.990762124711316 143 12 99.1 0 431 3 194 336 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 429 265 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
7398382 7398382 PRJNA1108487_P_NODE_3046_length_389_cov_3.363924_g2980_i0 PRJNA1108487 3046 389 3.363924 13.08566436 Pseudomonadati 3379134 Bacteria Bacteria 95.5 4.559999999999999e-23   NR MCD6280016.1 2026735 g2980 i0 67.1 4.24935732647815 70 19 54 1 262 53 4 69 MCD6280016.1 cold-shock protein [Deltaproteobacteria bacterium] diamond 1653 95.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
26878167 26878167 PRJNA1108487_P_NODE_6241_length_287_cov_1.822430_g6175_i0 PRJNA1108487 6241 287 1.82243 5.2303741 Myxococcota bacterium 2818507 Bacteria Bacteria 75.1 2.66e-13   NR MFO0751290.1 2818507 g6175 i0 44 0.78397212543554 75 39 78.4 2 226 2 418 489 MFO0751290.1 thrombospondin type-1 domain-containing protein [Myxococcota bacterium] diamond 225 75.1 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
26909567 26909567 PRJNA1108487_P_NODE_5162_length_311_cov_1.310924_g5096_i0 PRJNA1108487 5162 311 1.310924 4.07697364 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 115 4.06e-28   NR MBT6177438.1 2026735 g5096 i0 47.1 1.96784565916399 102 54 98.4 0 310 5 145 246 MBT6177438.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 612 115 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
26963942 26963942 PRJNA1108487_P_NODE_1322_length_580_cov_1.702170_g1257_i0 PRJNA1108487 1322 580 1.70217 9.872586 Pseudomonadati 3379134 Bacteria Bacteria 98.6 3.46e-20   NR MBL8606644.1 2026763 g1257 i0 35.1 1.89310344827586 174 104 89.5 3 580 62 335 500 MBL8606644.1 hypothetical protein [Myxococcales bacterium] diamond 1098 99 0.995959595959596 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27130526 27130526 PRJNA1108487_P_NODE_7842_length_260_cov_1.251337_g7776_i0 PRJNA1108487 7842 260 1.251337 3.2534762 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 68.2 4.82e-11   NR MBO6940011.1 2026735 g7776 i0 40.5 0.969230769230769 84 50 96.9 0 254 3 122 205 MBO6940011.1 thrombospondin type-1 domain-containing protein [Deltaproteobacteria bacterium] diamond 252 68.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27225597 27225597 PRJNA1108487_P_NODE_483_length_914_cov_2.768133_g432_i0 PRJNA1108487 483 914 2.768133 25.30073562 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 102 5e-21   NR MBN1770438.1 2026735 g432 i0 39.1 1.52625820568928 156 86 50.2 5 5 463 125 274 MBN1770438.1 endonuclease/exonuclease/phosphatase family protein [Deltaproteobacteria bacterium] diamond 1395 102 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27722829 27722829 PRJNA1108487_P_NODE_9444_length_249_cov_0.886364_g9378_i0 PRJNA1108487 9444 249 0.886364 2.20704636 root 1 Root_unresolved Root_unresolved 147 1.45e-40   NR RYZ13579.1 2484252 g9378 i0 87.8 6.91566265060241 82 10 98.8 0 247 2 163 244 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 1722 147 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
27857351 27857351 PRJNA1108487_P_NODE_365_length_1008_cov_3.622460_g321_i0 PRJNA1108487 365 1008 3.62246 36.5143968 Myxococcales bacterium 2026763 Bacteria Bacteria 49.7 0.018   NR MBC7975190.1 2026763 g321 i0 32.8 0.398809523809524 134 83 39.9 3 74 475 735 861 MBC7975190.1 S8 family serine peptidase [Myxococcales bacterium] diamond 402 49.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27857357 27857357 PRJNA1108487_P_NODE_6585_length_280_cov_1.130435_g6519_i0 PRJNA1108487 6585 280 1.130435 3.165218 Polyangiaceae bacterium 2268199 Bacteria Bacteria 83.2 2.8e-16   NR HEX2874163.1 2268199 g6519 i0 45.7 2.95714285714286 92 49 98.6 1 278 3 165 255 HEX2874163.1 Xaa-Pro aminopeptidase [Polyangiaceae bacterium] diamond 828 83.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
27983670 27983670 PRJNA1108487_P_NODE_9005_length_250_cov_2.610169_g8939_i0 PRJNA1108487 9005 250 2.610169 6.5254225 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 64.3 9.86e-10   NR MBO6940011.1 2026735 g8939 i0 40.7 7.152 86 46 97.2 2 249 7 150 235 MBO6940011.1 thrombospondin type-1 domain-containing protein [Deltaproteobacteria bacterium] diamond 1788 64.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28394108 28394108 PRJNA1108487_P_NODE_8966_length_251_cov_0.876404_g8900_i0 PRJNA1108487 8966 251 0.876404 2.19977404 Myxococcota bacterium 2818507 Bacteria Bacteria 44.3 0.0118   NR MFT4975920.1 2818507 g8900 i0 51.2 0.49003984063745 41 20 49 0 2 124 678 718 MFT4975920.1 signal transduction histidine kinase/DNA-binding response OmpR family regulator [Myxococcota bacterium] diamond 123 44.3 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28488961 28488961 PRJNA1108487_P_NODE_7087_length_271_cov_3.030303_g7021_i0 PRJNA1108487 7087 271 3.030303 8.21212113 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 42.7 0.00531   NR RLB83719.1 2026735 g7021 i0 40.7 0.653136531365314 59 33 63.1 1 67 237 2 60 RLB83719.1 MAG: hypothetical protein DRH24_06485 [Deltaproteobacteria bacterium] diamond 177 42.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28543561 28543561 PRJNA1108487_P_NODE_3867_length_351_cov_1.402878_g3801_i0 PRJNA1108487 3867 351 1.402878 4.92410178 Myxococcia 32015 Bacteria Bacteria 100 6.709999999999999e-23   NR MBK8995093.1 2026763 g3801 i0 48.2 3.90598290598291 114 51 93.2 4 7 333 60 170 MBK8995093.1 endonuclease/exonuclease/phosphatase family protein [Myxococcales bacterium] diamond 1371 100 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28583770 28583770 PRJNA1108487_P_NODE_3147_length_384_cov_1.765273_g3081_i0 PRJNA1108487 3147 384 1.765273 6.77864832 Sandaracinus sp. 2024858 Bacteria Bacteria 89.4 7.71e-18   NR MFO0684330.1 2024858 g3081 i0 43 2.7265625 121 63 92.2 4 355 2 267 384 MFO0684330.1 thrombospondin type-1 domain-containing protein [Sandaracinus sp.] diamond 1047 90.1 0.992230854605993 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus sp.
28646881 28646881 PRJNA1108487_P_NODE_847_length_703_cov_2.647619_g786_i0 PRJNA1108487 847 703 2.647619 18.61276157 Kofleriaceae bacterium 2212474 Bacteria Bacteria 60.5 1.4e-6   NR MEZ4399706.1 2212474 g786 i0 48.4 0.273115220483642 64 33 27.3 0 690 499 376 439 MEZ4399706.1 hypothetical protein [Kofleriaceae bacterium] diamond 192 60.5 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
28678510 28678510 PRJNA1108487_P_NODE_5727_length_298_cov_1.386667_g5661_i0 PRJNA1108487 5727 298 1.386667 4.13226766 Polyangia bacterium 3058050 Bacteria Bacteria 62.4 4.1e-10   NR HXJ19403.1 3058050 g5661 i0 61 1.68120805369128 41 16 41.3 0 175 297 4 44 HXJ19403.1 RNA-binding protein [Polyangia bacterium] diamond 501 62.4 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
29080170 29080170 PRJNA1108487_P_NODE_3708_length_357_cov_1.922535_g3642_i0 PRJNA1108487 3708 357 1.922535 6.86344995 root 1 Root_unresolved Root_unresolved 84.7 2.61e-16   NR MCA9666679.1 2026763 g3642 i0 45.6 6.52100840336134 114 55 95 2 17 355 51 158 MCA9666679.1 glutamine synthetase III [Myxococcales bacterium] diamond 2328 84.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29183703 29183703 PRJNA1108487_P_NODE_249_length_1182_cov_2.027953_g211_i0 PRJNA1108487 249 1182 2.027953 23.97040446 Kofleriaceae bacterium 2212474 Bacteria Bacteria 59.3 1.04e-5   NR HVV88584.1 2212474 g211 i0 37.1 0.225888324873096 89 51 21.3 1 917 1168 94 182 HVV88584.1 fibrinogen-like YCDxxxxGGGW domain-containing protein [Kofleriaceae bacterium] diamond 267 59.3 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
29467348 29467348 PRJNA1108487_P_NODE_6350_length_285_cov_1.471698_g6284_i0 PRJNA1108487 6350 285 1.471698 4.1943393 Polyangiaceae bacterium 2268199 Bacteria Bacteria 124 7.729999999999999e-32   NR MFO0658749.1 2268199 g6284 i0 67.8 0.947368421052632 90 29 94.7 0 16 285 182 271 MFO0658749.1 hypothetical protein [Polyangiaceae bacterium] diamond 270 124 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
29593597 29593597 PRJNA1108487_P_NODE_3630_length_360_cov_1.087108_g3564_i0 PRJNA1108487 3630 360 1.087108 3.9135888 Sandaracinus sp. 2024858 Bacteria Bacteria 107 1.93e-24   NR MFO0684330.1 2024858 g3564 i0 39.8 3.93333333333333 118 68 98.3 2 5 358 245 359 MFO0684330.1 thrombospondin type-1 domain-containing protein [Sandaracinus sp.] diamond 1416 107 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus sp.
29783383 29783383 PRJNA1108487_P_NODE_9431_length_249_cov_0.886364_g9365_i0 PRJNA1108487 9431 249 0.886364 2.20704636 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 72.8 1.02e-12   NR GDX82844.1 2026735 g9365 i0 50.7 0.855421686746988 71 35 85.5 0 214 2 344 414 GDX82844.1 xenobiotic ABC transporter ATP-binding protein [Deltaproteobacteria bacterium] diamond 213 72.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30122043 30122043 PRJNA1108487_P_NODE_3032_length_390_cov_1.968454_g2966_i0 PRJNA1108487 3032 390 1.968454 7.6769706 Archangium 47 Bacteria Bacteria 90.9 1.06e-18   NR MBL8939715.1 1872627 g2966 i0 41 1.8 117 61 83.8 3 60 386 48 164 MBL8939715.1 thrombospondin type-1 domain-containing protein [Archangium sp.] diamond 702 91.7 0.991275899672846 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
30193976 30193976 PRJNA1108487_P_NODE_10592_length_244_cov_1.333333_g10526_i0 PRJNA1108487 10592 244 1.333333 3.25333252 Myxococcota bacterium 2818507 Bacteria Bacteria 62 6.21e-9   NR MES2642603.1 2818507 g10526 i0 62.5 1.91803278688525 48 18 59 0 178 35 522 569 MES2642603.1 MopE-related protein [Myxococcota bacterium] diamond 468 62 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30952587 30952587 PRJNA1108487_P_NODE_10674_length_244_cov_0.912281_g10608_i0 PRJNA1108487 10674 244 0.912281 2.22596564 Kofleriaceae bacterium 2212474 Bacteria Bacteria 53.1 7.84e-6   NR HEX2691138.1 2212474 g10608 i0 40 3.71311475409836 80 44 98.4 1 240 1 163 238 HEX2691138.1 trypsin-like serine protease [Kofleriaceae bacterium] diamond 906 53.1 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
30952596 30952596 PRJNA1108487_P_NODE_6734_length_277_cov_1.529412_g6668_i0 PRJNA1108487 6734 277 1.529412 4.23647124 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 80.5 8.62e-16   NR TNF03084.1 2026735 g6668 i0 73.1 1.68953068592058 52 14 56.3 0 158 3 1 52 TNF03084.1 MAG: class II glutamine amidotransferase [Deltaproteobacteria bacterium] diamond 468 80.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31639140 31639140 PRJNA1108487_P_NODE_1136_length_622_cov_3.016393_g1073_i0 PRJNA1108487 1136 622 3.016393 18.76196446 Pseudomonadati 3379134 Bacteria Bacteria 232 4.53e-72   NR WP_044191788.1 394096 g1073 i0 64.3 13.7122186495177 168 60 81 0 505 2 2 169 WP_044191788.1 zinc-dependent alcohol dehydrogenase [Hyalangium minutum] diamond 8529 232 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium minutum
31639147 31639147 PRJNA1108487_P_NODE_9076_length_250_cov_0.881356_g9010_i0 PRJNA1108487 9076 250 0.881356 2.20339 Bacteria 2 Bacteria Bacteria 60.5 2.28e-8   NR MDH4282429.1 2026763 g9010 i0 31.9 4.38 72 48 85.2 1 17 229 394 465 MDH4282429.1 NAD(P)/FAD-dependent oxidoreductase [Myxococcales bacterium] diamond 1095 60.8 0.995065789473684 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31679467 31679467 PRJNA1108487_P_NODE_6097_length_290_cov_1.419355_g6031_i0 PRJNA1108487 6097 290 1.419355 4.1161295 Polyangiaceae bacterium 2268199 Bacteria Bacteria 68.2 7.36e-11   NR MFO0565656.1 2268199 g6031 i0 68.2 0.455172413793103 44 14 45.5 0 184 53 73 116 MFO0565656.1 DUF4215 domain-containing protein [Polyangiaceae bacterium] diamond 132 68.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
32050495 32050495 PRJNA1108487_P_NODE_9578_length_248_cov_0.891429_g9512_i0 PRJNA1108487 9578 248 0.891429 2.21074392 Bacteria 2 Bacteria Bacteria 51.6 3.04e-5   NR MBN2342260.1 2026735 g9512 i0 43.1 1.42741935483871 51 25 61.7 2 77 229 46 92 MBN2342260.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 354 51.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32375758 32375758 PRJNA1108487_P_NODE_6999_length_273_cov_1.170000_g6933_i0 PRJNA1108487 6999 273 1.17 3.1941 Enhygromyxa sp. 2666105 Bacteria Bacteria 71.2 3.85e-12   NR HLT36554.1 2666105 g6933 i0 44.9 2.50549450549451 89 47 95.6 1 271 11 238 326 HLT36554.1 hypothetical protein [Enhygromyxa sp.] diamond 684 71.2 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Enhygromyxa Enhygromyxa sp.
32407360 32407360 PRJNA1108487_P_NODE_7319_length_268_cov_1.200000_g7253_i0 PRJNA1108487 7319 268 1.2 3.216 Kofleriaceae bacterium 2212474 Bacteria Bacteria 65.9 3.6e-10   NR HEY4180233.1 2212474 g7253 i0 39.8 0.985074626865672 88 52 97.4 1 268 8 316 403 HEY4180233.1 hypothetical protein [Kofleriaceae bacterium] diamond 264 65.9 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
32534038 32534038 PRJNA1108487_P_NODE_6299_length_286_cov_1.464789_g6233_i0 PRJNA1108487 6299 286 1.464789 4.18929654 Polyangia bacterium 3058050 Bacteria Bacteria 100 2.3000000000000003e-22   NR HEX4462607.1 3058050 g6233 i0 46.8 0.986013986013986 94 49 98.6 1 284 3 1118 1210 HEX4462607.1 FG-GAP-like repeat-containing protein [Polyangia bacterium] diamond 282 100 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;