RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1108487" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 2 ✖

bioproject 1

  • PRJNA1108487 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20614539 20614539 PRJNA1108487_P_NODE_17_length_3045_cov_11.845559_g13_i0 PRJNA1108487 17 3045 11.845559 360.69727155 Redspotted grouper nervous necrosis virus 143919 Viruses Viruses 5502 0   NTclustered gi|156076357|gb|EF558368.1| 143919 g13 i0 99.278 99.071921182266 3045 22 100 0 1 3045 3057 13 Redspotted grouper nervous necrosis virus isolate China 1 RNA-dependent RNA polymerase gene, complete cds blastn 301674 5502 1 Viruses   Orthornavirae Kitrinoviricota Magsaviricetes Nodamuvirales Nodaviridae Betanodavirus Redspotted grouper nervous necrosis virus
22697537 22697537 PRJNA1108487_P_NODE_178_length_1328_cov_14.647012_g143_i0 PRJNA1108487 178 1328 14.647012 194.51231936 Redspotted grouper nervous necrosis virus 143919 Viruses Viruses 2398 0   NTclustered gi|98960854|ref|NC_008041.1| 143919 g143 i0 99.247 96.0873493975904 1328 10 100 0 1 1328 11 1338 Redspotted grouper nervous necrosis virus RNA 2, complete sequence blastn 127604 2398 1 Viruses   Orthornavirae Kitrinoviricota Magsaviricetes Nodamuvirales Nodaviridae Betanodavirus Redspotted grouper nervous necrosis virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;