RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where bioproject = "PRJNA1108487", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 20 ✖

tax_kingdom 1

  • Metazoa · 20 ✖

tax_clade 1

bioproject 1

  • PRJNA1108487 · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11223986 11223986 PRJNA1108487_P_NODE_6429_length_283_cov_1.485714_g6363_i0 PRJNA1108487 6429 283 1.485714 4.20457062 Caenorhabditis 6237 Nematoda Nematoda 161 4.159999999999999e-35   NTclustered gi|268577906|ref|XM_002643890.1| 6238 g6363 i0 86.806 13.3710247349823 144 19 51 0 140 283 692 549 Caenorhabditis briggsae Protein CBR-FTT-2 (Cbr-ftt-2), partial mRNA blastn 3784 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
11692125 11692125 PRJNA1108487_P_NODE_7350_length_267_cov_1.608247_g7284_i0 PRJNA1108487 7350 267 1.608247 4.29401949 Caenorhabditis briggsae 6238 Nematoda Nematoda 102 2.39e-17   NTclustered gi|268579136|ref|XM_002644505.1| 6238 g7284 i0 80.137 20.7640449438202 146 21 53 7 63 204 199 58 Caenorhabditis briggsae Protein CBR-PDI-2 (Cbr-pdi-2), partial mRNA blastn 5544 102 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
13773865 13773865 PRJNA1108487_P_NODE_6511_length_281_cov_1.903846_g6445_i0 PRJNA1108487 6511 281 1.903846 5.34980726 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.007   NTclustered gi|1376141561|ref|XM_024651035.1| 34506 g6445 i0 96.875 10.3451957295374 32 1 11 0 136 167 771 802 Strongyloides ratti BTB/POZ-like domain and BTB/POZ fold domain and BTB/POZ domain-containing protein (SRAE_2000023100), partial mRNA blastn 2907 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
15516030 15516030 PRJNA1108487_P_NODE_3533_length_365_cov_1.065068_g3467_i0 PRJNA1108487 3533 365 1.065068 3.8874982 Caenorhabditis brenneri 135651 Nematoda Nematoda 250 1.14e-61   NTclustered gi|241017545|gb|GQ169498.1| 135651 g3467 i0 79.942 111.427397260274 344 65 94 4 24 365 342 1 Caenorhabditis brenneri clone T4AA06.09 putative ubiquitin family protein mRNA, partial cds blastn 40671 250 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri
17598254 17598254 PRJNA1108487_P_NODE_2594_length_420_cov_7.397695_g2528_i0 PRJNA1108487 2594 420 7.397695 31.070319 root 1 Root_unresolved Root_unresolved 185 1.81e-57   NR CDW60131.1 36087 g2528 i0 62.5 2.91428571428571 136 51 97.1 0 409 2 1 136 CDW60131.1 60S ribosomal protein L27a [Trichuris trichiura] diamond 1224 186 0.99462365591397806 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
26805800 26805800 PRJNA1108487_P_NODE_2721_length_412_cov_1.197640_g2655_i0 PRJNA1108487 2721 412 1.19764 4.9342768 Opisthokonta 33154 Nematoda Nematoda 47.8 0.00378   NR KAF8383616.1 54126 g2655 i0 42.9 0.837378640776699 63 36 45.9 0 11 199 4 66 KAF8383616.1 hypothetical protein PRIPAC_72758 [Pristionchus pacificus] diamond 345 47.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
26869398 26869398 PRJNA1108487_P_NODE_6441_length_283_cov_1.485714_g6375_i0 PRJNA1108487 6441 283 1.485714 4.20457062 Opisthokonta 33154 Nematoda Nematoda 63.9 1.38e-9   NR VDD91361.1 51028 g6375 i0 44.4 8.56537102473498 72 40 76.3 0 68 283 50 121 VDD91361.1 unnamed protein product [Enterobius vermicularis] diamond 2424 63.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis
27162338 27162338 PRJNA1108487_P_NODE_9002_length_250_cov_2.644068_g8936_i0 PRJNA1108487 9002 250 2.644068 6.61017 Soboliphyme baturini 241478 Nematoda Nematoda 50.4 5.33e-5   NR VDP42323.1 241478 g8936 i0 37 0.876 73 43 87.6 1 239 21 1 70 VDP42323.1 unnamed protein product [Soboliphyme baturini] diamond 219 50.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
27352443 27352443 PRJNA1108487_P_NODE_1543_length_537_cov_2.165948_g1477_i0 PRJNA1108487 1543 537 2.165948 11.63114076 Meloidogyne graminicola 189291 Nematoda Nematoda 45.8 0.0364   NR AVZ46778.1 189291 g1477 i0 39.3 0.340782122905028 61 37 34.1 0 234 52 117 177 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 183 45.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
27510222 27510222 PRJNA1108487_P_NODE_6463_length_282_cov_2.105263_g6397_i0 PRJNA1108487 6463 282 2.105263 5.93684166 Heterodera trifolii 157864 Nematoda Nematoda 58.2 1.9e-7   NR KAL3073343.1 157864 g6397 i0 48.4 2.58510638297872 62 32 66 0 3 188 205 266 KAL3073343.1 hypothetical protein niasHT_038700 [Heterodera trifolii] diamond 729 58.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
27604989 27604989 PRJNA1108487_P_NODE_3704_length_357_cov_2.619718_g3638_i0 PRJNA1108487 3704 357 2.619718 9.35239326 Gnathostoma spinigerum 75299 Nematoda Nematoda 135 1.91e-35   NR MFH4975591.1 75299 g3638 i0 66.7 6.35294117647059 84 28 70.6 0 252 1 7 90 MFH4975591.1 hypothetical protein [Gnathostoma spinigerum] diamond 2268 135 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
27880275 27880275 PRJNA1108487_P_NODE_8925_length_251_cov_0.876404_g8859_i0 PRJNA1108487 8925 251 0.876404 2.19977404 Nematoda 6231 Nematoda Nematoda 82.4 1.23e-16   NR KAI1720621.1 166010 g8859 i0 46.2 3.82470119521912 78 42 93.2 0 17 250 1 78 KAI1720621.1 sel1 repeat domain-containing protein [Ditylenchus destructor] diamond 960 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
28164486 28164486 PRJNA1108487_P_NODE_7345_length_267_cov_1.608247_g7279_i0 PRJNA1108487 7345 267 1.608247 4.29401949 root 1 Root_unresolved Root_unresolved 83.2 2.58e-17   NR RCN42395.1 29170 g7279 i0 53.5 2.35955056179775 71 33 79.8 0 32 244 38 108 RCN42395.1 Ser/Thr phosphatase family protein [Ancylostoma caninum] diamond 630 83.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
28899178 28899178 PRJNA1108487_P_NODE_5648_length_299_cov_4.668142_g5582_i0 PRJNA1108487 5648 299 4.668142 13.95774458 Pristionchus fissidentatus 1538716 Nematoda Nematoda 57 8.42e-8   NR GMT18625.1 1538716 g5582 i0 36 1.00334448160535 100 58 99.3 3 298 2 2 96 GMT18625.1 hypothetical protein PFISCL1PPCAC_9922 [Pristionchus fissidentatus] diamond 300 57 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
29120600 29120600 PRJNA1108487_P_NODE_11089_length_243_cov_0.917647_g11023_i0 PRJNA1108487 11089 243 0.917647 2.22988221 Ditylenchus destructor 166010 Nematoda Nematoda 69.3 2.77e-12   NR KAI1729755.1 166010 g11023 i0 70.2 3.49382716049383 47 14 58 0 12 152 140 186 KAI1729755.1 ras family domain-containing protein [Ditylenchus destructor] diamond 849 69.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
29774589 29774589 PRJNA1108487_P_NODE_8671_length_252_cov_0.871508_g8605_i0 PRJNA1108487 8671 252 0.871508 2.19620016 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 159 4.52e-48   NR VDO44227.1 6290 g8605 i0 96.2 187.571428571429 78 3 92.9 0 250 17 62 139 VDO44227.1 unnamed protein product [Haemonchus placei] diamond 47268 160 0.99375 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus placei
29837776 29837776 PRJNA1108487_P_NODE_11271_length_242_cov_0.923077_g11205_i0 PRJNA1108487 11271 242 0.923077 2.23384634 Rhabditida 6236 Nematoda Nematoda 47 0.00111   NR VBB33759.1 6277 g11205 i0 78.6 3.81818181818182 28 6 34.7 0 84 1 43 70 VBB33759.1 unnamed protein product [Acanthocheilonema viteae] diamond 924 47 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
29941525 29941525 PRJNA1108487_P_NODE_471_length_921_cov_3.086085_g420_i0 PRJNA1108487 471 921 3.086085 28.42284285 Meloidogyne graminicola 189291 Nematoda Nematoda 62.4 4.37e-7   NR AVZ46778.1 189291 g420 i0 28 0.407166123778502 125 90 40.7 0 285 659 117 241 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 375 62.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
31110184 31110184 PRJNA1108487_P_NODE_375_length_997_cov_19.247835_g329_i0 PRJNA1108487 375 997 19.247835 191.90091495 Meloidogyne graminicola 189291 Nematoda Nematoda 110 5.8599999999999996e-24   NR AVZ46778.1 189291 g329 i0 50 0.391173520561685 130 65 39.1 0 280 669 117 246 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 390 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
31141599 31141599 PRJNA1108487_P_NODE_10355_length_245_cov_0.906977_g10289_i0 PRJNA1108487 10355 245 0.906977 2.22209365 Meloidogyne enterolobii 390850 Nematoda Nematoda 75.5 9.94e-14   NR CAD2185339.1 390850 g10289 i0 43.9 4.77551020408163 82 40 98 3 5 244 46 123 CAD2185339.1 unnamed protein product [Meloidogyne enterolobii] diamond 1170 75.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;