RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1108487", tax_kingdom = "Fungi" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1108487 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27036108 27036108 PRJNA1108487_P_NODE_9582_length_248_cov_0.891429_g9516_i0 PRJNA1108487 9582 248 0.891429 2.21074392 Olpidium bornovanus 278681 Fungi Fungi 77 2.09e-14   NR KAG5455696.1 278681 g9516 i0 61.1 0.870967741935484 72 20 78.6 2 54 248 76 146 KAG5455696.1 MAG: RED-like protein N-terminal region-domain-containing protein, partial [Olpidium bornovanus] diamond 216 77 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
27312102 27312102 PRJNA1108487_P_NODE_2723_length_411_cov_10.715976_g2657_i0 PRJNA1108487 2723 411 10.715976 44.04266136 Eukaryota 2759 Fungi Fungi 142 7.03e-41   NR KAG5461717.1 278681 g2657 i0 63.5 4.68613138686131 104 38 75.9 0 327 16 3 106 KAG5461717.1 MAG: 60S ribosomal protein L33-A-like protein [Olpidium bornovanus] diamond 1926 143 0.993006993006993 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;