RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1108487", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA1108487 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14242235 14242235 PRJNA1108487_P_NODE_6712_length_278_cov_1.141463_g6646_i0 PRJNA1108487 6712 278 1.141463 3.17326714 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 93.6 6.48e-20   NR XP_001316272.1 412133 g6646 i0 49.5 4.01438848920863 93 46 99.3 1 1 276 86 178 XP_001316272.1 protein serine/threonine kinase protein [Trichomonas vaginalis G3] diamond 1116 94 0.995744680851064 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28710090 28710090 PRJNA1108487_P_NODE_8307_length_253_cov_0.866667_g8241_i0 PRJNA1108487 8307 253 0.866667 2.19266751 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 82.4 4e-16   NR XP_068349810.1 1144522 g8241 i0 50.6 3.80632411067194 79 35 93.7 1 2 238 244 318 XP_068349810.1 uncharacterized protein TRFO_09829 [Tritrichomonas foetus] diamond 963 82.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32375754 32375754 PRJNA1108487_P_NODE_1839_length_498_cov_2.251765_g1773_i0 PRJNA1108487 1839 498 2.251765 11.2137897 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 190 2.7600000000000003e-58   NR XP_068360038.1 1144522 g1773 i0 58.8 3.86144578313253 160 66 96.4 0 17 496 5 164 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 1923 190 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;