RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1108487", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1108487 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28132989 28132989 PRJNA1108487_P_NODE_6285_length_286_cov_1.830986_g6219_i0 PRJNA1108487 6285 286 1.830986 5.23661996 Bacteria 2 Bacteria Bacteria 130 8.03e-35   NR MEP6506594.1 2448054 g6219 i0 61.1 2.97902097902098 95 37 99.7 0 2 286 86 180 MEP6506594.1 FkbM family methyltransferase [Gemmatimonadales bacterium] diamond 852 130 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28362474 28362474 PRJNA1108487_P_NODE_5386_length_306_cov_1.339056_g5320_i0 PRJNA1108487 5386 306 1.339056 4.09751136 Longimicrobiales bacterium 2910168 Bacteria Bacteria 45.8 0.0063   NR MEO5509184.1 2910168 g5320 i0 31.9 1.81372549019608 91 61 89.2 1 29 301 475 564 MEO5509184.1 acyl-CoA dehydrogenase [Longimicrobiales bacterium] diamond 555 45.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;