RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1108487", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1108487 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30216870 30216870 PRJNA1108487_P_NODE_6752_length_277_cov_1.470588_g6686_i0 PRJNA1108487 6752 277 1.470588 4.07352876 Bacteria 2 Bacteria Bacteria 46.6 0.0025   NR MCK5740947.1 2268192 g6686 i0 29.9 1.8086642599278 87 51 92.1 3 7 261 142 220 MCK5740947.1 T9SS type A sorting domain-containing protein [Chlorobiota bacterium] diamond 501 46.6 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
32217491 32217491 PRJNA1108487_P_NODE_11178_length_242_cov_0.923077_g11112_i0 PRJNA1108487 11178 242 0.923077 2.23384634 Chlorobium phaeobacteroides 1096 Bacteria Bacteria 52.4 1.38e-5   NR MBC8524288.1 1096 g11112 i0 58.1 0.533057851239669 43 18 53.3 0 11 139 277 319 MBC8524288.1 bifunctional methionine sulfoxide reductase B/A protein [Chlorobium phaeobacteroides] diamond 129 52.4 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;